Difference between revisions of "LncRNAWiki:Featured"
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Revision as of 15:46, 13 October 2014
| Name | Transcript ID | Alias | Description |
|---|---|---|---|
| 21A | NONHSAT128494 | ncRNA 21A | N/A |
| 7SK | NONHSAT113149 | 7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198 | RNA, 7SK small nuclear |
| 7SL | lnc-LRR1-1:1 | 7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486 | RNA, 7SL, cytoplasmic 1 |
| AK023948 | NONHSAT129210 | N/A | |
| BC200 | lnc-EPCAM-1:2 | BCYRN1,BC200a, NCRNA00004, LINC00004 | BCYRN1, brain cytoplasmic RNA 1 |
| CYP4A22-AS1 | ENST00000444042.2 | Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506 | CYP4A22 antisense RNA 1 |
| cyrano | ENST00000500949.2 | LOC729082, linc-NUSAP1-1, OIP5-AS1 | OIP5 antisense RNA 1 |
| DHFR upstream transcripts | NONHSAT102417 | DHFR minor transcript 5'-UTR, ENSG00000228716 | |
| DISC2 | NONHSAT010191 | DISC1-AS1, DISC1OS, NCRNA00015 | disrupted in schizophrenia 2 (non-protein coding) |
| EGO | NONHSAT087635 | EGOT, ENSG00000235947 | Eosinophil granule ontogeny (EGO) RNA |
| Emx2os | lnc-PDZD8-3:1 | ENSG00000229847 | Emx2 opposite strand transcript. |
| Evf2 | lnc-DLX5-3:1 | Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764 | |
| GAS5 | NONHSAT007663 | SNHG2, ENSG00000234741 | |
| Gomafu | lnc-CRYBA4-2:1 | MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783 | MIAT: myocardial infarction associated transcript ((Ishii 2006)). RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)). |
| H19 | NONHSAT017465 | Q96MK8,ENSG00000130600 | H19, imprinted maternally expressed transcript (non-protein coding) |
| HAR1A | lnc-BIRC7-2:1 | HAR1F, ENSG00000238820 | highly accelerated region 1A |
| HAR1B | ENST00000447910.2 | HAR1R, ENSG00000231133 | highly accelerated region 1B |
| HOTAIR | NONHSAT028508 | Gm16258, Hox antisense intergenic RNA, ENSG00000228630 | Hox antisense intergenic RNA |
| HOTAIRM1 | lnc-EVX1-12:1 | HIT06113, HIT92376, linc1548, ENSG00000233429 | HOXA transcript antisense RNA, myeloid-specific 1 |
| HOTTIP | NONHSAT119717 | HOXA13as, HIT18844, NCRNA00213, ENSG00000243766 | HOXA transcript at the distal tip |
| Hoxa11as | NONHSAT119704 | Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990 | HOXA11 antisense RNA |
| HOXA3as | NONHSAT119676 | HIT12844, HIT94153, HOXA-AS2, ENSG00000253552 | N/A |
| HOXA6as | lnc-EVX1-9:1 | HIT16800 | N/A |
| HULC | NONHSAT107640 | ENSG00000251164 | hepatocellular carcinoma up-regulated long non-coding RNA |
| IPW | NONHSAT041063 | NCRNA00002 | imprinted in Prader-Willi syndrome |
| Jpx | lnc-ZCCHC13-1:1 | Enox, NCRNA00183, ENSG00000225470 | Enox (expressed neighbor of Xist) |
| Kcnq1ot1 | NONHSAT017524 | LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821 | Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1 |
| KRASP1 | NONHSAT113225 | ENSG00000220635 | KRAS Pseudogene 1 |
| LINC00568 | ENST00000416894.1 | Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1 | focally amplified long non-coding RNA in epithelial cancer |
| lincRNA-RoR | NONHSAT059436 | lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609 | long intergenic non-protein coding RNA, regulator of reprogramming |
| LOC100887755 | lnc-SNAI1-1:1 | Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1 | translation regulatory long non-coding RNA 1 |
| LOC285194 | NONHSAT091315 | LSAMP-AS3, ENSG00000243197,TUSC7 | tumor suppressor candidate 7 (non-protein coding) |
| LUST | NONHSAT089783 | Je2, ENSG00000003756 | LUCA-15-specific transcript. |
| Malat1 | ENST00000534336.1 | Neat2, ENSG00000251562 | Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript |
| mascRNA | lnc-SCYL1-1:5 | Malat1 | mascRNA (MALAT1-associated small cytoplasmic RNA) |
| MEG3 | NONHSAT039745 | Gtl2, ENSG00000214548 | maternally expressed 3 (non-protein coding) |
| ncR-uPAR | NONHSAT102247 | NCRUPAR, ENSG00000225407 | non-protein coding RNA, upstream of F2R/PAR1 |
| NDM29 | lnc-C11orf16-1:1 | 29A | neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)). |
| Nespas | lnc-CTSZ-5:1 | Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590 | Nespas: neuroendocrine secretory protein (Nesp) antisense. |
| NRON | NONHSAT134764 | ENSG00000253079 | non-protein coding RNA, repressor of NFAT |
| NTT | NONHSAT115106 | noncoding transcript in T cells. | |
| Otx2os1 | lnc-C14orf101-5:1 | OTX2-AS1, ENSG00000248550 | OTX2 opposite strand transcript 1 |
| PANDA | lnc-CDKN1A-1:1 | P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR | promoter of CDKN1A antisense DNA damage activated RNA |
| PCGEM1 | NONHSAT076153 | ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA | Prostate-specific transcript 1 |
| PDZK1IP1-AS1 | ENST00000429328.2 | Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853 | long intergenic non-protein coding RNA 853 |
| PRINS | NONHSAT011777 | ENSG00000238115 | Psoriasis susceptibility-related RNA Gene Induced by Stress |
| PTENP1 | NONHSAT130775 | PTENpg1, PTEN2, ENSG00000237984 | PTEN Pseudogene 1 |
| Rian | ENST00000553584.1 | Irm, MEG8 and Bsr, linc1458, ENSG00000258399 | Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8 |
| RNCR3 | lnc-TNKS-1:1 | A930011O12Rik, LOC157627, ENSG00000253230 | Retinal noncoding RNA 3 |
| SAF | NONHSAT015489 | FAS-AS,ENSG00000026103,FAS-AS1 | FAS antisense RNA 1 |
| SCA8 | NONHSAT034251 | ATXN8OS, KLHL1AS, ENSG00000230223 | Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand |
| SNHG1 | NONHSAT021826 | UHG, ENSG00000255717 | SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene. |
| SNHG3 | lnc-OR10H5-1:1 | U17HG, linc1343, ENSG00000242125 | Small nucleolar RNA host gene 3 |
| SNHG4 | NONHSAT104072 | U19H, ENSG00000200959 | Small nucleolar RNA host gene 4 |
| SNHG5 | NONHSAT054526 | U50HG, ENSG00000203875 | Small nucleolar RNA host gene 5 |
| SNHG6 | lnc-TCF24-2:3 | U87HG, ENSG00000245910 | Small nucleolar RNA host gene 6 |
| SPRY4-IT1 | lnc-NDFIP1-3:1 | AK024556, ENSG00000274721 | SPRY4 intronic transcript 1 (non-protein coding) |
| SRA | lnc-SRA1-1:1 | SRA1, ENSG00000213523 | Steroid receptor RNA Activator |
| TEA-ncRNAs | NONHSAT035776 | ENSG00000251002 | T early alpha |
| Tmevpg1 | ENST00000538665.1 | ENSG00000255733 | Theiler's murine encephalomyelitis virus persistence candidate gene 1 |
| TncRNA | NONHSAT022116 | TSU | TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA). |
| TUG1 | NONHSAT084827 | ENSG00000253352 | taurine up-regulated gene 1 (Young (2005)). |
| UCA1 | lnc-OR10H5-1:1 | UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049 | urothelial cancer associated 1 (non-protein coding) |
| UM9-5 | NONHSAT095745 | NCRNA00099, KCNIP4-IT1 | KCNIP4 intronic transcript 1 (non-protein coding) |
| WT1-AS | lnc-EIF3M-1:1 | WIT1, ENSG00000183242 | WT1 (Wilms' tumor 1) antisense transcript |
| Xist | NONHSAT137541 | ENSG00000229807 | X inactive-specific transcript |
| Zeb2NAT | NONHSAT074775 | ZEB2AS, ENSG00000238057 | Zeb2 natural antisense transcript |
| Zfas1 | NONHSAT080206 | Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410 | Zinc finger antisense 1 |
| Zfhx2as | ENST00000554403.1 | Zfh-5AS, ENSG00000157306 | zinc finger homeobox 2, antisense |
| AK082072 | lnc-RASA1-3:23,lnc-RASA1-3:25 | linc-POLR3G-8, ENSG00000247828 | N/A |
| Alpha 250/ Alpha 280 | NONHSAT104559,lnc-NDST1-1:2 | N/A | N/A |
| ANRIL | NONHSAT130421,lnc-C9orf53-2:1 | CDKN2B-AS1, p15AS, ENSG00000240498 | Antisense noncoding RNA in the INK4 locus |
| BACE1AS | NONHSAT024403,lnc-RNF214-1:2 | NCRNA00177, BACE1-AS; FJ573250 | BACE1 antisense RNA |
| Beta-globin transcripts | NONHSAT017676,NONHSAT017675,NONHSAT017674 | N/A | N/A |
| BX118339 | lnc-PRL-6:2,lnc-PRL-6:1 | Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678 | N/A |
| CAR Intergenic 10 | NONHSAT016928,lnc-FANK1-3:1 | Intergenic10, CR611911, AK055628 | Chromatin Associated RNA 10 |
| Dio3os | NONHSAT040032,NONHSAT040039 | Dio3as, ENSG00000258498 | DIO3 opposite strand/antisense RNA (head to head) |
| KDM5BAS1 | ENST00000425295.1,ENST00000553157.1,ENST00000417262.1 | Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288 | N/A |
| LINC00570 | ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2 | ncRNA-a5,ENSG00000224177, | long intergenic non-protein coding RNA 570 |
| NEAT1 | ENST00000501122.2,NONHSAT022111 | MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532 | Nuclear enriched abundant transcript 1. |
| ST7OT | NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932 | ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188 | N/A |
| snaR | lnc-BSPH1-1:1,lnc-BSPH1-2:1 | small NF90-associated RNAs | small NF90-associated RNAs |
| Y RNAs | lnc-PDIA4-1:1 | N/A | N/A |
| PR antisense transcripts | NONHSAT023851 | N/A | N/A |
