LncRNAWiki:Featured

Name	Transcript ID	Alias	Description
21A	NONHSAT128494	ncRNA 21A	N/A
7SK	NONHSAT113149	7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198	RNA, 7SK small nuclear
7SL	lnc-LRR1-1:1	7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486	RNA, 7SL, cytoplasmic 1
ABALON	ABALON	INXS	apoptotic BCL2L1-antisense long non-coding RNA
AIRN	ENST00000609176.1	AIRN, AIRN, IGF2RAS	Antisense of IGF2R non-protein coding RNA
PTCSC1	NONHSAT129210	AK023948	papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding)
BCYRN1	lnc-EPCAM-1:2	BC200,BC200a, NCRNA00004, LINC00004	BCYRN1, brain cytoplasmic RNA 1
CYP4A22-AS1	ENST00000444042.2	Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506	CYP4A22 antisense RNA 1
cyrano	ENST00000500949.2	LOC729082, linc-NUSAP1-1, OIP5-AS1	OIP5 antisense RNA 1
DHFR upstream transcripts	NONHSAT102417	DHFR minor transcript 5'-UTR, ENSG00000228716
DISC2	NONHSAT010191	DISC1-AS1, DISC1OS, NCRNA00015	disrupted in schizophrenia 2 (non-protein coding)
EGO	NONHSAT087635	EGOT, ENSG00000235947	Eosinophil granule ontogeny (EGO) RNA
Emx2os	lnc-PDZD8-3:1	ENSG00000229847	Emx2 opposite strand transcript.
Evf2	lnc-DLX5-3:1	Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
GAS5	NONHSAT007663	SNHG2, ENSG00000234741
Gomafu	lnc-CRYBA4-2:1	MIAT, RNCR2, C22orf35, LINC00066, NCRNA00066, ENSG00000225783	MIAT: myocardial infarction associated transcript ((Ishii 2006)). RNCR2: retinal noncoding RNA 2 ((Blackshaw 2004)).
H19	NONHSAT017465	Q96MK8,ENSG00000130600	H19, imprinted maternally expressed transcript (non-protein coding)
HAR1A	lnc-BIRC7-2:1	HAR1F, ENSG00000238820	highly accelerated region 1A
HAR1B	ENST00000447910.2	HAR1R, ENSG00000231133	highly accelerated region 1B
HOTAIR	NONHSAT028508	Gm16258, Hox antisense intergenic RNA, ENSG00000228630	Hox antisense intergenic RNA
HOTAIRM1	lnc-EVX1-12:1	HIT06113, HIT92376, linc1548, ENSG00000233429	HOXA transcript antisense RNA, myeloid-specific 1
HOTTIP	NONHSAT119717	HOXA13as, HIT18844, NCRNA00213, ENSG00000243766	HOXA transcript at the distal tip
Hoxa11as	NONHSAT119704	Hoxa11s, Hoxa11os, NCRNA00076, ENSG00000240990	HOXA11 antisense RNA
HOXA3as	NONHSAT119676	HIT12844, HIT94153, HOXA-AS2, ENSG00000253552	N/A
HOXA6as	lnc-EVX1-9:1	HIT16800	N/A
HULC	NONHSAT107640	ENSG00000251164	hepatocellular carcinoma up-regulated long non-coding RNA
IPW	NONHSAT041063	NCRNA00002	imprinted in Prader-Willi syndrome
Jpx	lnc-ZCCHC13-1:1	Enox, NCRNA00183, ENSG00000225470	Enox (expressed neighbor of Xist)
Kcnq1ot1	NONHSAT017524	LIT1, KvLQT1-AS, KvLQT1OT1, ENSG00000269821	Kcnq1ot1: Kcnq1 opposite transcript 1;LIT1: long QT intronic transcript 1
KRASP1	NONHSAT113225	ENSG00000220635	KRAS Pseudogene 1
LINC00568	ENST00000416894.1	Noncoding RNA activating1: ncRNA-a1, RP11-54A4.8, ENSG00000228126.1, FALEC,FAL1	focally amplified long non-coding RNA in epithelial cancer
lincRNA-RoR	NONHSAT059436	lincRNA-Regulator of Reprogramming, lincRNA-ST8SIA3, ENSG00000258609	long intergenic non-protein coding RNA, regulator of reprogramming
LOC100887755	lnc-SNAI1-1:1	Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1	translation regulatory long non-coding RNA 1
LOC285194	NONHSAT091315	LSAMP-AS3, ENSG00000243197,TUSC7	tumor suppressor candidate 7 (non-protein coding)
LUST	NONHSAT089783	Je2, ENSG00000003756	LUCA-15-specific transcript.
Malat1	ENST00000534336.1	Neat2, ENSG00000251562	Malat1: Metastasis-associated lung adenocarcinoma transcript 1; Neat2: Nuclear enriched abundant transcript
mascRNA	lnc-SCYL1-1:5	Malat1	mascRNA (MALAT1-associated small cytoplasmic RNA)
MEG3	NONHSAT039745	Gtl2, ENSG00000214548	maternally expressed 3 (non-protein coding)
ncR-PAR	NONHSAT102247	NCRUPAR, ENSG00000225407	non-protein coding RNA, upstream of F2R/PAR1
NDM29	lnc-C11orf16-1:1	29A	neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)).
Nespas	lnc-CTSZ-5:1	Gnas-as, GNAS antisense transcript, GNAS1as, SANG, ENSG00000235590	Nespas: neuroendocrine secretory protein (Nesp) antisense.
NRON	NONHSAT134764	ENSG00000253079	non-protein coding RNA, repressor of NFAT
NTT	NONHSAT115106		noncoding transcript in T cells.
Otx2os1	lnc-C14orf101-5:1	OTX2-AS1, ENSG00000248550	OTX2 opposite strand transcript 1
PANDA	lnc-CDKN1A-1:1	P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR	promoter of CDKN1A antisense DNA damage activated RNA
PCGEM1	NONHSAT076153	ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA	Prostate-specific transcript 1
PDZK1IP1-AS1	ENST00000429328.2	Noncoding RNA activating4: ncRNA-a4, PDZK1IP1 antisense RNA 1,ENSG00000224805,LINC00853	long intergenic non-protein coding RNA 853
PRINS	NONHSAT011777	ENSG00000238115	Psoriasis susceptibility-related RNA Gene Induced by Stress
PTENP1	NONHSAT130775	PTENpg1, PTEN2, ENSG00000237984	PTEN Pseudogene 1
Rian	ENST00000553584.1	Irm, MEG8 and Bsr, linc1458, ENSG00000258399	Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
RNCR3	lnc-TNKS-1:1	A930011O12Rik, LOC157627, ENSG00000253230	Retinal noncoding RNA 3
SAF	NONHSAT015489	FAS-AS,ENSG00000026103,FAS-AS1	FAS antisense RNA 1
SCA8	NONHSAT034251	ATXN8OS, KLHL1AS, ENSG00000230223	Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
SNHG1	NONHSAT021826	UHG, ENSG00000255717	SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
SNHG3	lnc-OR10H5-1:1	U17HG, linc1343, ENSG00000242125	Small nucleolar RNA host gene 3
SNHG4	NONHSAT104072	U19H, ENSG00000200959	Small nucleolar RNA host gene 4
SNHG5	NONHSAT054526	U50HG, ENSG00000203875	Small nucleolar RNA host gene 5
SNHG6	lnc-TCF24-2:3	U87HG, ENSG00000245910	Small nucleolar RNA host gene 6
SPRY4-IT1	lnc-NDFIP1-3:1	AK024556, ENSG00000274721	SPRY4 intronic transcript 1 (non-protein coding)
SRA	lnc-SRA1-1:1	SRA1, ENSG00000213523	Steroid receptor RNA Activator
TEA-ncRNAs	NONHSAT035776	ENSG00000251002	T early alpha
Tmevpg1	ENST00000538665.1	ENSG00000255733	Theiler's murine encephalomyelitis virus persistence candidate gene 1
TncRNA	NONHSAT022116	TSU	TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
TUG1	NONHSAT084827	ENSG00000253352	taurine up-regulated gene 1 (Young (2005)).
UCA1	lnc-OR10H5-1:1	UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049	urothelial cancer associated 1 (non-protein coding)
UM9-5	NONHSAT095745	NCRNA00099, KCNIP4-IT1	KCNIP4 intronic transcript 1 (non-protein coding)
WT1-AS	lnc-EIF3M-1:1	WIT1, ENSG00000183242	WT1 (Wilms' tumor 1) antisense transcript
Xist	NONHSAT137541	ENSG00000229807	X inactive-specific transcript
Zeb2NAT	NONHSAT074775	ZEB2AS, ENSG00000238057	Zeb2 natural antisense transcript
Zfas1	NONHSAT080206	Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410	Zinc finger antisense 1
Zfhx2as	ENST00000554403.1	Zfh-5AS, ENSG00000157306	zinc finger homeobox 2, antisense
TMEM161B-AS1	lnc-RASA1-3:23,lnc-RASA1-3:25	AK082072,linc-POLR3G-8, ENSG00000247828	TMEM161B antisense RNA 1
Alpha 250/ Alpha 280	NONHSAT104559,lnc-NDST1-1:2	N/A	N/A
CDKN2B-AS1	NONHSAT130421,lnc-C9orf53-2:1	ANRIL, p15AS, ENSG00000240498	CDKN2B antisense RNA 1
BACE1-AS	NONHSAT024403,lnc-RNF214-1:2	BACE1AS,NCRNA00177; FJ573250	BACE1 antisense RNA
Beta-globin transcripts	NONHSAT017676,NONHSAT017675,NONHSAT017674	N/A	N/A
BX118339	lnc-PRL-6:2,lnc-PRL-6:1	Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678	N/A
CAR Intergenic 10	NONHSAT016928,lnc-FANK1-3:1	Intergenic10, CR611911, AK055628	Chromatin Associated RNA 10
Dio3os	NONHSAT040032,NONHSAT040039	Dio3as, ENSG00000258498	DIO3 opposite strand/antisense RNA (head to head)
KDM5BAS1	ENST00000425295.1,ENST00000553157.1,ENST00000417262.1	Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288	N/A
LINC00570	ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2	ncRNA-a5,ENSG00000224177,	long intergenic non-protein coding RNA 570
NEAT1	ENST00000501122.2,NONHSAT022111	MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532	Nuclear enriched abundant transcript 1.
ST7OT	NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932	ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188	N/A
snaR	lnc-BSPH1-1:1,lnc-BSPH1-2:1	small NF90-associated RNAs	small NF90-associated RNAs
Y RNAs	lnc-PDIA4-1:1	N/A	N/A
PR antisense transcripts	NONHSAT023851	N/A	N/A