| Name
|
Transcript ID
|
Alias
|
Description
|
| 21A
|
NONHSAT128494
|
ncRNA 21A
|
N/A
|
| 7SK
|
NONHSAT113149
|
7-3 RNA, K-RNA, 7SK-RNA, 7SK snRNA, RN7SK, ENSG00000202198
|
RNA, 7SK small nuclear
|
| 7SL
|
lnc-LRR1-1:1
|
7S RNA, SRP RNA, 4.5S SRP RNA, 4.5S RNA, RN7SL1 RNA, ENSG00000258486
|
RNA, 7SL, cytoplasmic 1
|
| ABALON
|
ABALON
|
INXS
|
apoptotic BCL2L1-antisense long non-coding RNA
|
| AIRN
|
ENST00000609176.1
|
AIRN, AIRN, IGF2RAS
|
Antisense of IGF2R non-protein coding RNA
|
| PTCSC1
|
NONHSAT129210
|
AK023948
|
papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding)
|
| BCYRN1
|
lnc-EPCAM-1:2
|
BC200,BC200a, NCRNA00004, LINC00004
|
BCYRN1, brain cytoplasmic RNA 1
|
| CYP4A22-AS1
|
ENST00000444042.2
|
Noncoding RNA activating3: ncRNA-a3, ENST00000444042.2, ENSG00000225506
|
CYP4A22 antisense RNA 1
|
| OIP5-AS1
|
ENST00000500949.2
|
cyrano,LOC729082, linc-NUSAP1-1, OIP5-AS1
|
OIP5 antisense RNA 1
|
| DHFR upstream transcripts
|
NONHSAT102417
|
DHFR minor transcript 5'-UTR, ENSG00000228716
|
|
| DISC2
|
NONHSAT010191
|
DISC1-AS1, DISC1OS, NCRNA00015
|
disrupted in schizophrenia 2 (non-protein coding)
|
| EGOT
|
NONHSAT087635
|
EGO, "eosinophil granule ontogeny", NCRNA00190, "non-protein coding RNA 190", ENSG00000235947
|
Eosinophil granule ontogeny (EGO) RNA
|
| EMX2OS
|
lnc-PDZD8-3:1
|
EMX2-AS1, NCRNA00045, "non-protein coding RNA 45",ENSG00000229847
|
Emx2 opposite strand transcript.
|
| Evf2
|
lnc-DLX5-3:1
|
Evf-2, Dlx6as1, Dlx6os1, ENSG00000231764
|
|
| GAS5
|
NONHSAT007663
|
SNHG2, ENSG00000234741
|
|
| MIAT
|
lnc-CRYBA4-2:1
|
FLJ25967, gomafu, LINC00066, lncRNA-MIAT, "long intergenic non-protein coding RNA 66", NCRNA00066, "non-protein coding RNA 66", Rncr2
|
myocardial infarction associated transcript (non-protein coding)
|
| H19
|
NONHSAT017465
|
Q96MK8,ENSG00000130600
|
H19, imprinted maternally expressed transcript (non-protein coding)
|
| HAR1A
|
lnc-BIRC7-2:1
|
HAR1F, ENSG00000238820
|
highly accelerated region 1A
|
| HAR1B
|
ENST00000447910.2
|
HAR1R, ENSG00000231133
|
highly accelerated region 1B
|
| HOTAIR
|
NONHSAT028508
|
Gm16258, Hox antisense intergenic RNA, ENSG00000228630
|
Hox antisense intergenic RNA
|
| HOTAIRM1
|
lnc-EVX1-12:1
|
HIT06113, HIT92376, linc1548, ENSG00000233429
|
HOXA transcript antisense RNA, myeloid-specific 1
|
| HOTTIP
|
NONHSAT119717
|
HOXA13as, HIT18844, NCRNA00213, ENSG00000243766
|
HOXA transcript at the distal tip
|
| HOXA11-AS
|
NONHSAT119704
|
"HOXA cluster antisense RNA 5 (non-protein coding)", HOXA-AS5, "HOXA11 antisense RNA 1 (non-protein coding)", HOXA11-AS1, HOXA11S, NCRNA00076, "non-protein coding RNA 76", ENSG00000240990
|
HOXA11 antisense RNA
|
| HOXA-AS2
|
NONHSAT119676
|
HOXA3as, ENSG00000253552
|
HOXA cluster antisense RNA 2
|
| HOXA-AS3
|
lnc-EVX1-9:1
|
HOXA6as
|
HOXA cluster antisense RNA 3
|
| HULC
|
NONHSAT107640
|
ENSG00000251164
|
hepatocellular carcinoma up-regulated long non-coding RNA
|
| IPW
|
NONHSAT041063
|
NCRNA00002
|
imprinted in Prader-Willi syndrome
|
| JPX
|
lnc-ZCCHC13-1:1
|
DCBALD06, ENOX, "expressed neighbor of XIST", "just proximal to XIST", LINC00183
|
JPX transcript, XIST activator (non-protein coding)
|
| KCNQ1OT1
|
NONHSAT017524
|
"KCNQ1 antisense RNA 2 (non-protein coding)", "KCNQ1 overlapping transcript 1 (non-protein coding)", KCNQ1-AS2, KvDMR1, KvLQT1-AS, LIT1, NCRNA00012, "non-protein coding RNA 12"
|
KCNQ1 opposite strand/antisense transcript 1 (non-protein coding)
|
| KRASP1
|
NONHSAT113225
|
ENSG00000220635
|
KRAS Pseudogene 1
|
| FALEC
|
ENST00000416894.1
|
LINC00568, "long intergenic non-protein coding RNA 568", ENSG00000228126.1
|
focally amplified long non-coding RNA in epithelial cancer
|
| lincRNA-ROR
|
NONHSAT059436
|
ROR, lincRNA-ST8SIA3, ENSG00000258609
|
long intergenic non-protein coding RNA, regulator of reprogramming
|
| LOC100887755
|
lnc-SNAI1-1:1
|
Noncoding RNA activating7: ncRNA-a7, ENST00000431460.1,ENSG00000231265,TRERNA1
|
translation regulatory long non-coding RNA 1
|
| TUSC7
|
NONHSAT091315
|
LINC00902, LOC285194, ENSG00000243197
|
tumor suppressor candidate 7 (non-protein coding)
|
| RBM5-AS1
|
NONHSAT089783
|
"LUCA-15-specific transcript", LUST, ENSG00000003756
|
RBM5 antisense RNA 1
|
| MALAT1
|
ENST00000534336.1
|
HCN, "hepcarcin", LINC00047, "long intergenic non-protein coding RNA 47", MALAT-1, mascRNA, "metastasis associated in lung adenocarcinoma transcript 1", NCRNA00047, NEAT2, "non-protein coding RNA 47", "nuclear enriched abundant transcript 2", "nuclear paraspeckle assembly transcript 2 (non-protein coding)", PRO1073, ENSG00000251562
|
metastasis associated lung adenocarcinoma transcript 1 (non-protein coding)
|
| mascRNA
|
lnc-SCYL1-1:5
|
Malat1
|
mascRNA (MALAT1-associated small cytoplasmic RNA)
|
| MEG3
|
NONHSAT039745
|
Gtl2, ENSG00000214548
|
maternally expressed 3 (non-protein coding)
|
| ncR-PAR
|
NONHSAT102247
|
NCRUPAR, ENSG00000225407
|
non-protein coding RNA, upstream of F2R/PAR1
|
| NDM29
|
lnc-C11orf16-1:1
|
29A
|
neuroblastoma differentiation marker 29 (Castelnuovo (2010), Pagano (2007)).
|
| GNAS-AS1
|
lnc-CTSZ-5:1
|
"GNAS antisense", GNAS1AS, NCRNA00075, NESP-AS, NESPAS, "non-protein coding RNA 75", SANG, ENSG00000235590
|
neuroendocrine secretory protein (Nesp) antisense.
|
| NRON
|
NONHSAT134764
|
ENSG00000253079
|
non-protein coding RNA, repressor of NFAT
|
| NTT
|
NONHSAT115106
|
|
noncoding transcript in T cells.
|
| OTX2-AS1
|
lnc-C14orf101-5:1
|
OTX2OS1, ENSG00000248550
|
OTX2 antisense RNA 1 (head to head)
|
| PANDAR
|
lnc-CDKN1A-1:1
|
P21 associated ncRNA DNA damage activated, PANDA antisense RNA, ENSG00000213500, PANDAR
|
promoter of CDKN1A antisense DNA damage activated RNA
|
| PCGEM1
|
NONHSAT076153
|
ENSG00000227418; PCAT9; LINC00071; NCRNA00071 lncRNA
|
Prostate-specific transcript 1
|
| LINC00853
|
ENST00000429328.2
|
"PDZK1IP1 antisense RNA 1 (non-protein coding)", "PDZK1IP1 antisense RNA 1 (tail to tail)", PDZK1IP1-AS1 ,ENSG00000224805
|
long intergenic non-protein coding RNA 853
|
| PRINS
|
NONHSAT011777
|
ENSG00000238115
|
Psoriasis susceptibility-related RNA Gene Induced by Stress
|
| PTENP1
|
NONHSAT130775
|
PTENpg1, PTEN2, ENSG00000237984
|
PTEN Pseudogene 1
|
| Rian
|
ENST00000553584.1
|
Irm, MEG8 and Bsr, linc1458, ENSG00000258399
|
Rian: RNA Imprinted and Accumulated in Nucleus;Irm: Imprinted RNA near Meg3/Gtl2;MEG8: Maternally expressed gene 8
|
| RNCR3
|
lnc-TNKS-1:1
|
A930011O12Rik, LOC157627, ENSG00000253230
|
Retinal noncoding RNA 3
|
| SAF
|
NONHSAT015489
|
FAS-AS,ENSG00000026103,FAS-AS1
|
FAS antisense RNA 1
|
| SCA8
|
NONHSAT034251
|
ATXN8OS, KLHL1AS, ENSG00000230223
|
Spinocerebellar ataxia 8 (SCA8) RNA;KLHL1AS: kelch-like 1 (Drosophila) antisense;ATXN8OS: ataxin 8 opposite strand
|
| SNHG1
|
NONHSAT021826
|
UHG, ENSG00000255717
|
SNHG1:Small nucleolar RNA host gene 1;UHG: U22 host gene.
|
| SNHG3
|
lnc-OR10H5-1:1
|
U17HG, linc1343, ENSG00000242125
|
Small nucleolar RNA host gene 3
|
| SNHG4
|
NONHSAT104072
|
U19H, ENSG00000200959
|
Small nucleolar RNA host gene 4
|
| SNHG5
|
NONHSAT054526
|
U50HG, ENSG00000203875
|
Small nucleolar RNA host gene 5
|
| SNHG6
|
lnc-TCF24-2:3
|
U87HG, ENSG00000245910
|
Small nucleolar RNA host gene 6
|
| SPRY4-IT1
|
lnc-NDFIP1-3:1
|
AK024556, ENSG00000274721
|
SPRY4 intronic transcript 1 (non-protein coding)
|
| SRA
|
lnc-SRA1-1:1
|
SRA1, ENSG00000213523
|
Steroid receptor RNA Activator
|
| TEA-ncRNAs
|
NONHSAT035776
|
ENSG00000251002
|
T early alpha
|
| IFNG-AS1
|
ENST00000538665.1
|
LincR-Ifng-3'AS, NEST, "Theiler's murine encephalomyelitis virus persistence candidate gene 1", Tmevpg1, ENSG00000255733
|
IFNG antisense RNA 1
|
| TncRNA
|
NONHSAT022116
|
TSU
|
TncRNA: trophoblast noncoding RNA; TSU: trophoblast STAT utron (untranslated region of an mRNA).
|
| TUG1
|
NONHSAT084827
|
ENSG00000253352
|
taurine up-regulated gene 1 (Young (2005)).
|
| UCA1
|
lnc-OR10H5-1:1
|
UCA1a, CUDR, UCAT1, LINC00178, NCRNA00178, GCAP2, GUCA1B, GUCA2, RP48, ENSG00000214049
|
urothelial cancer associated 1 (non-protein coding)
|
| KCNIP4-IT1
|
NONHSAT095745
|
"non coding transcript UM9(5)", UM9-5
|
KCNIP4 intronic transcript 1 (non-protein coding)
|
| WT1-AS
|
lnc-EIF3M-1:1
|
WIT1, ENSG00000183242
|
WT1 (Wilms' tumor 1) antisense transcript
|
| XIST
|
NONHSAT137541
|
ENSG00000229807
|
X inactive-specific transcript
|
| ZEB2-AS1
|
NONHSAT074775
|
Zeb2NAT, ENSG00000238057
|
Zeb2 natural antisense transcript
|
| ZFAS1
|
NONHSAT080206
|
Znfx1 antisense, 1500012F01Rik, NCRNA00275, ENSG00000177410
|
ZNFX1 antisense RNA 1
|
| Zfhx2as
|
ENST00000554403.1
|
Zfh-5AS, ENSG00000157306
|
zinc finger homeobox 2, antisense
|
| TMEM161B-AS1
|
lnc-RASA1-3:23,lnc-RASA1-3:25
|
AK082072,linc-POLR3G-8, ENSG00000247828
|
TMEM161B antisense RNA 1
|
| Alpha 250/ Alpha 280
|
NONHSAT104559,lnc-NDST1-1:2
|
N/A
|
N/A
|
| CDKN2B-AS1
|
NONHSAT130421,lnc-C9orf53-2:1
|
ANRIL, p15AS, ENSG00000240498
|
CDKN2B antisense RNA 1
|
| BACE1-AS
|
NONHSAT024403,lnc-RNF214-1:2
|
BACE1AS,NCRNA00177; FJ573250
|
BACE1 antisense RNA
|
| Beta-globin transcripts
|
NONHSAT017676,NONHSAT017675,NONHSAT017674
|
N/A
|
N/A
|
| LINC00581
|
lnc-PRL-6:2,lnc-PRL-6:1
|
BX118339,Hs.112750, linc-MBOAT1-4: TCONS_00012107, linc-MBOAT1-4: TCONS_00012678
|
long intergenic non-protein coding RNA 581
|
| CAR Intergenic 10
|
NONHSAT016928,lnc-FANK1-3:1
|
Intergenic10, CR611911, AK055628
|
Chromatin Associated RNA 10
|
| DIO3OS
|
NONHSAT040032,NONHSAT040039
|
DIO3-AS1, NCRNA00041, "non-protein coding RNA 41", ENSG00000258498
|
DIO3 opposite strand/antisense RNA (head to head)
|
| PCAT6
|
ENST00000425295.1,ENST00000553157.1,ENST00000417262.1
|
Noncoding RNA activating2: ncRNA-a2, KDM5B antisense RNA 1 (KDM5B-AS1),, ENSG00000228288
|
N/A
|
| LINC00570
|
ENST00000437795.1,ENST00000432665.1,ENST00000453100.1,ENST00000417473.2
|
KDM5BAS1, ncRNA-a2, onco-lncRNA-96, PCAN-R1, "prostate cancer-associated noncoding RNA 1",ENSG00000224177,
|
prostate cancer associated transcript 6 (non-protein coding)
|
| NEAT1
|
ENST00000501122.2,NONHSAT022111
|
MEN epsilon/beta, VINC, TncRNA, linc1317, ENSG00000245532
|
Nuclear enriched abundant transcript 1.
|
| ST7OT
|
NONHSAT122926,NONHSAT122918,NONHSAT122914,NONHSAT122932
|
ST7OT1, ST7OT2, ST7OT3, ST7OT4, ST7AS1, ST7AS2, ST7AS3, ST7AS4, ENSG00000214188
|
N/A
|
| snaR
|
lnc-BSPH1-1:1,lnc-BSPH1-2:1
|
small NF90-associated RNAs
|
small NF90-associated RNAs
|
| Y RNAs
|
lnc-PDIA4-1:1
|
N/A
|
N/A
|
| PR antisense transcripts
|
NONHSAT023851
|
N/A
|
N/A
|
