DEK56 - Plant Editosome Database

Editing Details

Species

Gene ID

Organelle

Edited Gene

Position

Region

Nuclear Genome

Organelle Genome

Other Position Region

Other Position

Editing Type

Codon

Amino Acid

Molecular Effect

Experiment Details

Zea mays

Zm00001eb188450

Mitochondrion

atp1

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	50.00%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	30.00%	Low	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

atp4

360

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	67.05%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	81.36%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmB

406

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	25.23%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	37.50%	Low	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmB

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	31.82%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	60.91%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

1145

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	65.23%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	78.41%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

122

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	59.32%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	74.32%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

146

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	63.86%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	82.27%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

160

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	55.23%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	68.86%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

325

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	77.05%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	90.91%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	10.45%	Poor	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	23.18%	Low	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFc

906

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	40.68%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	65.23%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFn

1214

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	25.91%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	43.64%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFn

595

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	68.54%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	50.00%	Medium	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFn

752

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	89.58%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	72.79%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

ccmFn

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	44.79%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	31.04%	Low	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

cox2

482

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	91.67%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	80.21%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

cox3

764

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	90.63%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	78.33%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

matR

1124

CDS

B73_RefGen_v5

C-to-U

CCC=>CUC
NA=>NA

P=>L
NA=>NA

Recoding
NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	82.29%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	18.75%	Poor	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

matR

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	51.14%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	67.05%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

matR

1905

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	41.82%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	55.68%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

matR

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	45.45%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	59.55%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

mttb

127

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	47.73%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	62.05%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

mttb

373

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	25.23%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	46.59%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad1

835

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	15.68%	Poor	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	28.86%	Low	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad2

356

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	65.45%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	81.82%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad2

962

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	85.45%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	97.73%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad3

349

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	53.41%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	92.95%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad4

156

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	25.91%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	38.18%	Low	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad4

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	26.59%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	42.95%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad5

1183

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	26.14%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	43.41%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad6

-3

B73_RefGen_v5

NB mitochondrial genome

Genomic position

5'UTR

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	29.55%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	47.95%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad6

-45

B73_RefGen_v5

NB mitochondrial genome

Genomic position

5'UTR

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	12.95%	Poor	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	31.59%	Low	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad6

146

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	80.21%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	60.42%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

nad6

159

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	35.42%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	19.79%	Poor	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps12_ct

418

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	95.83%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	76.67%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps13

100

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	65.23%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	77.27%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps13

256

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	64.09%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	76.14%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps2A

200

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	76.04%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	51.88%	Medium	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps2A

449

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	77.08%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	64.58%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps2B

206

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	77.92%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	53.13%	Medium	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps2B

510

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	18.75%	Poor	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	6.46%	Poor	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps3

1066

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	31.36%	Low	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	51.36%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps3

CDS

B73_RefGen_v5

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	81.25%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	64.58%	High	Decreased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps4

1031

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	76.14%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	88.18%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps4

1045

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	65.23%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	79.55%	High	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps4

549

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	48.86%	Medium	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	59.32%	Medium	Increased	37956067

Zea mays

Zm00001eb188450

Mitochondrion

rps4

955

CDS

B73_RefGen_v5

NB mitochondrial genome

C-to-U

NA=>NA

**Experiment Details**
Genotype (Ecotype)	Allele	Treatment	Treatment Detail	Mutant Type	Phenotype	Tissue	Development Stage	Detection Method	Editing Frequency	Editing Extent	Mutant Effect	PMID
W22	WT	Control	Control	No mutant	Normal	Kernel	18 DAP	STS-PCRseq	72.05%	High	None	37956067
W22	dek56	NA	NA	Homozygous; Recessive	Small size; White wrinkled pericarp; Substantial reduction in seed filling	Kernel	18 DAP	STS-PCRseq	83.64%	High	Increased	37956067

Editing Factor:	DEK56
Synonym:	Defective Kernel 56
Description:	Dysfunction of DEK56 resulted in altered cytidine (C)-to-uridine (U) editing efficiency at 48 editing sites across 21 mitochondrial transcripts; Notably, the editing efficiency of the maturase-related (matR)-1124 site was substantially reduced or abolished in the dek56 mutant; The splicing efficiency of NADH dehydrogenase subunit 4 (nad4) Introns 1 and 3 was substantially reduced in dek56 kernels, which might be a consequence of the defective MatR function; Through a protein-protein interaction test, we hypothesized that DEK56 carries out its function by recruiting the PPR-DYW protein PPR motif, coiled-coil, and DYW domain-containing protein 1 (PCW1)
Protein Family:	PPR
Subclass:	E
Physical Interaction:	PCW1; ZmGRP23; ZmMORF1; ZmMORF8
Construct Structure:	PLS-E1-E2
Gene ID & Species:	Zm00001eb188450 (Zea mays)
Edited Gene(s):	atp1 ccmFn cox2 cox3 matR nad6 rps2A rps2B rps3 rps12_ct atp4 ccmB ccmFc mttb nad1 nad2 nad3 nad4 nad5 rps4 rps13
Editing Type(s):	C-to-U (94)
Publication(s):	[1] DEFECTIVE KERNEL 56 functions in mitochondrial RNA editing and maize seed development., Plant physiology, 2024. [PMID=37956067]

Summary

Editing Details