atp4 - Plant Editosome Database - BIG Data Center

Summary

Gene: atp4
Function: ATP synthase
Species: 17
Editing Factors:13 (DEK36, DYW2, EMP21, MEF3, MEF37, MEF8, MORF1, MORF3, NUWA, ORRM4, OTP90, PGN, SlORRM4)
Editing Types:
C-to-U (373)
U-to-C (6)
Editing Events: 389 (C-to-U: 373   NA: 10   U-to-C: 6)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Asclepias syriacaMitochondrion2
NA: 2
632712-633272CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Citrullus lanatusMitochondrion13
C-to-U: 13
365499
365508
365520
365609
365664
365665
365667
365688
365700
365734
365797
365826
365856
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCU=>CUU
UCA=>UUA
UCG=>UUG
CCG=>YUG
CCG=>YUG
CUC=>UUC
ACU=>AUU
UCU=>UUU
CCA=>CUA
CCC=>CUC
UCA=>UUA
CGU=>UGU
ACC=>ACY
P=>L
S=>L
S=>L
P=>L
P=>L
L=>F
T=>I
S=>F
P=>L
P=>L
S=>L
R=>C
T=>T
Cucurbita pepoMitochondrion12
C-to-U: 12
471196
471226
471318
471352
471364
471385
471387
471388
471443
471532
471544
471553
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>UUG
UCU=>UUU
CCG=>UUG
CCU=>CUU
CCC=>CUC
UCA=>UUA
ACC=>ACU
CUC=>UUC
CCA=>CUA
ACU=>AYU
UCA=>UUA
UCG=>UUG
P=>L
S=>F
P=>L
P=>L
P=>L
S=>L
T=>T
L=>F
P=>L
T=>T/I
S=>L
S=>L
Cycas taitungensisMitochondrion2
C-to-U: 2
309095CDS
CDS
-C-to-U
C-to-U
CGA=>UGA
CGA=>UGA
R=>TERM
R=>TERM
Ginkgo bilobaMitochondrion21
C-to-U: 21
28214
28284
28321
28337
28340
28349
28418
28427
28433
28434
28502
28505
28526
28583
28595
28628
28632
28635
28664
28689
28697
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CGU=>UGU
CCG=>CUG
CCA=>CUA
UCC=>UUC
CCA=>CUA
CGU=>UGU
CCA=>UCA
UCA=>UUA
UCC=>UUC
UCU=>UUU
UCG=>UUG
CCA=>CUA
CGU=>UGU
CCU=>CUU
CUU=>UUU
UCG=>UUG
CCC=>CUC
CCG=>CUG
ACG=>AUG
UCC=>UCU
P=>L
R=>C
P=>L
P=>L
S=>F
P=>L
R=>C
P=>S
S=>L
S=>F
S=>F
S=>L
P=>L
R=>C
P=>L
L=>F
S=>L
P=>L
P=>L
T=>M
S=>S
Lotus japonicusMitochondrion24
C-to-U: 24
97718
97727
97739
97883
97884
97886
97907
97919
98016
98045
98078
98094
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CUA=>UUA
CCA=>CUA
UCG=>UUG
CCU=>CUU
CCA=>CUA
CGU=>UGU
UCA=>UUA
UCA=>UUA
ACU=>AUU
CCC=>CUC
CCG=>UCG
CCA=>CUA
CCG=>CUG
CUA=>UUA
CCA=>CUA
UCG=>UUG
CCU=>CUU
UCA=>UUA
UCA=>UUA
CGU=>UGU
CCG=>UCG
ACU=>AUU
CCC=>CUC
P=>L
L=>L
P=>L
S=>L
P=>L
P=>L
R=>C
S=>L
S=>L
T=>I
P=>L
P=>S
P=>L
P=>L
L=>L
P=>L
S=>L
P=>L
S=>L
S=>L
R=>C
P=>S
T=>I
P=>L
Millettia pinnataMitochondrion24
C-to-U: 24
81508
81524
81557
81586
81683
81695
81716
81718
81719
81863
81875
81884
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCC=>CUC
CCG=>CUG
UCG=>UUG
UCA=>UUA
CCU=>CUU
CGU=>UGU
ACU=>AUU
CUA=>UUA
CCA=>CUA
CCG=>UCG
UCA=>UUA
CCG=>CUG
CCA=>CUA
CCC=>CUC
UCA=>UUA
CCU=>CUU
UCG=>UUG
CUA=>UUA
CGU=>UGU
ACU=>AUU
CCG=>UCG
UCA=>UUA
CCA=>CUA
P=>L
P=>L
P=>L
S=>L
S=>L
P=>L
R=>C
T=>I
L=>L
P=>L
P=>S
S=>L
P=>L
P=>L
P=>L
S=>L
P=>L
S=>L
L=>L
R=>C
T=>I
P=>S
S=>L
P=>L
Nelumbo nuciferaMitochondrion15
C-to-U: 15
75456
75472
75475
75487
75505
75534
75537
75631
75643
75664
75666
75667
75811
75823
75832
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCG=>UUG
ACU=>AUU
CCU=>CUU
UCU=>UUU
CGU=>UGU
CCA=>CUA
CUA=>UUA
CCC=>CUC
UCA=>UUA
CCG=>CUG
CGU=>UGU
CCG=>UCG
CCA=>CUA
UCA=>UUA
S=>L
S=>L
U=>I
P=>L
S=>F
R=>C
P=>L
L=>L
P=>L
S=>L
P=>L
R=>C
P=>S
P=>L
S=>L
Nothoceros aenigmaticusMitochondrion4
NA: 2
U-to-C: 2
106163-106714
106660
NA
NA
CDS
CDS
+
-
U-to-C
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion38
C-to-U: 38
144405
144495
144540
144549
144597
144648
144693
144732
144734
144735
144781
144786
144804
144819
144832
144846
144861
144881
144963
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
CCA=>CUA
UCG=>UUG
CCA=>CUA
CCC=>CUC
CCA=>UCA
CCA=>CUA
CCC=>CUC
NA=>NA
UCU=>UUU
UCU=>UUU
CCA=>UCA
CCG=>CUG
UCG=>UUG
ACG=>AUG
CCG=>CUG
UCG=>UUG
UCC=>UUC
CUC=>CUU
CCA=>CUA
UCC=>UUC
CUC=>CUU
ACG=>AUG
CCU=>CUU
NA=>NA
CCU=>CUU
CCA=>CUA
ACG=>AUG
CAU=>UAU
ACG=>AUG
ACG=>AUG
CAU=>UAU
NA=>NA
UCU=>UUU
UCG=>UUG
UCU=>UUU
ACG=>AUG
CCA=>CUA
NA=>NA
P=>L
S=>L
P=>L
P=>L
P=>S
P=>L
P=>L
NA=>NA
S=>F
S=>F
P=>S
P=>L
S=>L
T=>M
P=>L
S=>L
S=>F
L=>L
P=>L
S=>F
L=>L
T=>M
P=>L
NA=>NA
P=>L
P=>L
T=>M
H=>Y
T=>M
T=>M
H=>Y
NA=>NA
S=>F
S=>L
S=>F
T=>M
P=>L
Phaeoceros laevisMitochondrion3
NA: 1
U-to-C: 2
174257-174808
174571
174754
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phoenix dactyliferaMitochondrion10
C-to-U: 10
248700
248721
248868
248889
248901
248998
249027
249045
249057
249060
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
CCU=>CUU
CGU=>UGU
ACU=>AUU
UCU=>UUU
UCC=>UUC
UCA=>UUA
UCA=>UUA
CCA=>CUA
S=>L
S=>L
P=>L
R=>C
T=>I
S=>F
S=>F
S=>L
S=>L
P=>L
Psilotum nudumMitochondrion14
C-to-U: 14
255309
255470
255685
255689
255750
255754
255764
255772
255788
255907
256036
256189
256214
256215
5'UTR
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
3'UTR
5'UTR
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
UUC=>UUU
NA=>NA
UCG=>UUG
CCA=>CUA
UCA=>UUA
UCU=>UUU
CGU=>UGU
NA=>NA
NA=>NA
CCA=>CUA
UUC=>UUU
AUC=>AUU
UCG=>UUG
NA=>NA
F=>F
NA=>NA
S=>L
P=>L
S=>L
S=>F
R=>C
NA=>NA
NA=>NA
P=>L
F=>F
I=>I
S=>L
Spirodela polyrhiza 7498Mitochondrion2
C-to-U: 2
120313CDS
CDS
+C-to-U
C-to-U
CGA=>UGA
CGA=>UGA
R=>TERM
R=>TERM
Welwitschia mirabilisMitochondrion1
NA: 1
567138-567776CDS+NANA=>NANA=>NA
Zea mays subsp. maysMitochondrion36
C-to-U: 36
138683
138785
138806
138853
138884
139095
139124
139137
139142
139154
139157
139173
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CGU=>UGU
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCU=>UUU
CCA=>CUA
CCG=>UCG
CCG=>UCG
UCA=>UUA
UCU=>UUU
CUA=>UUA
CUA=>UUA
UCA=>UUA
ACU=>AUU
UGC=>UGU
ACU=>AUU
UGC=>UGU
UCA=>UUA
UCA=>UUA
CGU=>UGU
CGU=>UGU
CCA=>CUA
CCG=>UCG
UCU=>UUU
CCA=>CUA
UCU=>UUU
CUA=>UUA
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCU=>UUU
ACU=>AUU
UGC=>UGU
UCA=>UUA
UCA=>UUA
S=>L
R=>C
S=>L
S=>L
S=>L
S=>F
P=>L
P=>S
P=>S
S=>L
S=>F
L=>L
L=>L
S=>L
T=>I
C=>C
T=>I
C=>C
S=>L
S=>L
R=>C
R=>C
P=>L
P=>S
S=>F
P=>L
S=>F
L=>L
S=>L
S=>F
S=>L
S=>F
T=>I
C=>C
S=>L
S=>L
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)