Resource for Perennial Plant Genomes and Regulation

PPGR (Perennial Plant Genomes and Regulation Database) provides a comprehensive, high-quality resource of gene expression patterns, regulatory genes, metabolic pathways, protein-protein interactions, TF-target interactions of perennial woody plants. 
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Examples:

Quick search can yield to false positives as one identifier can be referenced by 2 different fields



eg:Potri.002G040400 or Potri.019G083600;Potri.013G113100;Potri.007G014400;Potri.005G116800;Potri.001G018400
Multiple genes are separated by commas (,) or semicolons (;) or newlines (\n).

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Data Release

Species

Transcriptome Samples
9,015
Transcription Factors
107,344
Gene Associations
847,940,727
Resistance Genes
10,263
Horizontal Transfer Genes
52,829
Online Tools
8



Latest News

  • PPGR version 1.0.0 released - Jun 2023

  • PPI,TTI,Co-Expresssion data were loaded in network - Jun 2023

  • Tools have been added - Jun 2023



Features

Genome

A total of 60 species of perennial woody plants' genomic data have been collected generating a new reference set through annotation and alignment.

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Network

The network demonstrates the pre-computed information of six types of protein-protein/TF-targets interactions evidence between genes by conducting searches

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Pathway

Provide characteristic pathway information for perennial woody plants to understand the growth regulation processes in woody plants.

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Blast

Blast through perennial woody plants for quick and accurate search results.

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Tools

Visual and user-friendly online tools.

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Download

Downloadable files are available in the database.

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Please Cite:

Yang S., Zong W., Shi L., Li R., Ma Z., Ma S., Si J., Bao Y., Li R., Xie J. et al. (2024) PPGR: a comprehensive perennial plant genomes and regulation database. Nucleic Acids Res, https://doi.org/10.1093/nar/gkad963.


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