PPGR - Reference Genome


Populus trichocarpa Black cottonwood (Populus trichocarpa) is a species of eudicot in the family Salicaceae (willow family) . Common Name : Black cottonwood Lineage : Salicaceae family Chinese Name : 毛果杨 Reference Assembly Version: Pop_tri_v4.1 Level : chromosome Taxonomy : 3694 Genome Size(Mb): 392.2 Transcript Number: 52400 Gene Number: 34699 Reference : Tuskan GA, Difazio S, Jansson S, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 2006[16973872]
Phyllostachys edulis Kikko-chiku (Phyllostachys edulis) is a species of monocot in the family Poaceae (grass family) . Common Name : Kikko-chiku Lineage : Poaceae family Chinese Name : 毛竹 Reference Assembly Version: V1.1 Level : scaffold Taxonomy : 38705 Genome Size(Mb): 1907.6 Transcript Number: 50936 Gene Number: 50936 Reference : Zhao H, Gao Z, Wang L, et al. Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis). Gigascience. 2018[31307060]
Picea abies Norway spruce (Picea abies) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Norway spruce Lineage : Pinaceae family Chinese Name : 挪威云杉 Reference Assembly Version: V1.0b Level : scaffold Taxonomy : 3329 Genome Size(Mb): 12301.4 Transcript Number: 70736 Gene Number: 70736
Pinus lambertiana Sugar pine (Pinus lambertiana) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Sugar pine Lineage : Pinaceae family Chinese Name : 糖松 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 3343 Genome Size(Mb): 21300.2 Transcript Number: 38518 Gene Number: 38518
Pinus tabuliformis Southern chinese pine (Pinus tabuliformis) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Southern chinese pine Lineage : Pinaceae family Chinese Name : 油松 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 88731 Genome Size(Mb): 25422.8 Transcript Number: 144584 Gene Number: 80467 Reference : Niu S, Li J, Bo W, et al. The Chinese pine genome and methylome unveil key features of conifer evolution. Cell 2022[34965378]
Pinus taeda Loblolly pine (Pinus taeda) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Loblolly pine Lineage : Pinaceae family Chinese Name : 火炬松 Reference Assembly Version: V2.0 Level : scaffold Taxonomy : 3352 Genome Size(Mb): 22104.4 Transcript Number: 51751 Gene Number: 51751
Populus alba White poplar (Populus alba) is a species of eudicot in the family Salicaceae (willow family) . Common Name : White poplar Lineage : Salicaceae family Chinese Name : 银白杨 Reference Assembly Version: ASM523922v1 Level : scaffold Taxonomy : 43335 Genome Size(Mb): 417 Transcript Number: 50006 Gene Number: 36757 Reference : Brenner WG, Mader M, Müller NA, et al. High Level of Conservation of Mitochondrial RNA Editing Sites Among Four Populus Species. G3 (Bethesda). 2019[30617214]
Populus alba x Populus glandulosa Populus alba x populus glandulosa is a hybrid species of eudicot in the family Salicaceae (willow family) . Common Name : Hybrid Poplar 84K Lineage : Salicaceae family Chinese Name : 84K杨 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 153471 Genome Size(Mb): 748.6 Transcript Number: 94142 Gene Number: 85741
Populus deltoides Populus deltoides is a species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 美州黑杨 Reference Assembly Version: I-69_v2.0 Level : chromosome Taxonomy : 3696 Genome Size(Mb): 428.6 Transcript Number: 44265 Gene Number: 32149 Reference : Bai S, Wu H, Zhang J, et al. Genome Assembly of Salicaceae Populus deltoides (Eastern Cottonwood) I-69 Based on Nanopore Sequencing and Hi-C Technologies. J Hered. 2021[33730157]
Populus euphratica Euphrates poplar (Populus euphratica) is a species of eudicot in the family Salicaceae (willow family) . Common Name : Euphrates poplar Lineage : Salicaceae family Chinese Name : 胡杨 Reference Assembly Version: PopEup_1.0 Level : scaffold Taxonomy : 75702 Genome Size(Mb): 496 Transcript Number: 52532 Gene Number: 36885 Reference : Zhang QJ, Gao LZ. The complete chloroplast genome sequence of desert poplar (Populus euphratica). Mitochondrial DNA A DNA Mapp Seq Anal. 2016[24810062]
Populus nigra x maximowiczii Hybrid Poplar 'NM6' is an F1 hybrid between P. nigra and P. maximowiczii. This hybrid is a cross of species in different sections of the genus Populus. It was selected for its rapid growth and suitability for biomass production in Northern climates. Lineage : Salicaceae family Chinese Name : 杂交NM6 Reference Assembly Version: V1.1 Level : chromosome Taxonomy : 75703 Genome Size(Mb): 401.1 Transcript Number: 54735 Gene Number: 32909 Reference : Populus maximowiczii x nigra NM6 v1.1, DOE-JGI, http://phytozome.jgi.doe.gov/info/PmaximowicziixnigraNM6_v1_1NM6[]
Populus pruinosa Hui hu yang (Populus pruinosa) is a species of eudicot in the family Salicaceae (willow family) . Common Name : Hui hu yang Lineage : Salicaceae family Chinese Name : 灰胡杨 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 492479 Genome Size(Mb): 479.3 Transcript Number: 35131 Gene Number: 35131
Populus tomentosa Chinese white poplar (Populus tomentosa) is a species of eudicot in the family Salicaceae (willow family) . Common Name : Chinese white poplar Lineage : Salicaceae family Chinese Name : 毛白杨 Reference Assembly Version: PTv2 Level : chromosome Taxonomy : 118781 Genome Size(Mb): 739.8 Transcript Number: 59102 Gene Number: 60139 Reference : An X, Gao K, Chen Z, et al. Hybrid origin ofPopulus tomentosaCarr. identified through genome sequencing and phylogenomic analysis. 2020[doi:10.1101/2020.04.07.030692]
Populus tremula European aspen (Populus tremula) is a species of eudicot in the family Salicaceae (willow family) . Common Name : European aspen Lineage : Salicaceae family Chinese Name : 欧洲山杨 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 113636 Genome Size(Mb): 408.8 Transcript Number: 73765 Gene Number: 37183
Populus tremula x Populus tremuloides Populus tremula x populus tremuloides is a hybrid species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 欧美杂种山杨 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 47664 Genome Size(Mb): 385.5 Transcript Number: 32116 Gene Number: 27284
Populus tremuloides Quaking aspen (Populus tremuloides) is a species of eudicot in the family Salicaceae (willow family) . Common Name : Quaking aspen Lineage : Salicaceae family Chinese Name : 美洲山杨 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 3693 Genome Size(Mb): 377.5 Transcript Number: 48320 Gene Number: 36779
Prunus armeniaca Apricot (Prunus armeniaca) is a species of eudicot in the family Rosaceae (rose family) . Common Name : Apricot Lineage : Rosaceae family Chinese Name : 杏 Reference Assembly Version: pruArmRojPasHapCUR Level : scaffold Taxonomy : 36596 Genome Size(Mb): 251.3 Transcript Number: 29211 Gene Number: 29211 Reference : Campoy JA, Sun H, Goel M, et al. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biol. 2020[33372615]
Prunus persica Peach (Prunus persica) is a species of eudicot in the family Rosaceae (rose family) . Common Name : Peach Lineage : Rosaceae family Chinese Name : 扁桃 Reference Assembly Version: V2.1 Level : chromosome Taxonomy : 3760 Genome Size(Mb): 227.4 Transcript Number: 47089 Gene Number: 26873 Reference : Verde I, Jenkins J, Dondini L, et al. The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity. BMC Genomics 2017[28284188]
Pseudotsuga menziesii Douglas-fir (Pseudotsuga menziesii) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Douglas-fir Lineage : Pinaceae family Chinese Name : 花旗松 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 3357 Genome Size(Mb): 15694.3 Transcript Number: 51419 Gene Number: 51419
Pyrus x bretschneideri Chinese white pear (Pyrus x bretschneideri) is a hybrid species of eudicot in the family Rosaceae (rose family) . Common Name : Chinese white pear Lineage : Rosaceae family Chinese Name : 白梨 Reference Assembly Version: Pyrus_bretschneideri_v1 Level : scaffold Taxonomy : 225117 Genome Size(Mb): 509.1 Transcript Number: 55706 Gene Number: 45323 Reference : -[]
Abies alba Abete-blanco (Abies alba) is a species of seed plant in the family Pinaceae (pine family) . Common Name : Abete-blanco Lineage : Pinaceae family Chinese Name : 欧洲冷杉 Reference Assembly Version: V1.1 Level : scaffold Taxonomy : 45372 Genome Size(Mb): 18167.4 Transcript Number: 98227 Gene Number: 94205
Acer catalpifolium Acer amplum subsp. catalpifolium is a subspecies of Acer amplum. Lineage : Aceraceae family Chinese Name : 梓叶枫 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 1642853 Genome Size(Mb): 654.5 Transcript Number: 35132 Gene Number: 35131 Reference : Yu T, Hu Y, Zhang Y, et al. Whole-Genome Sequencing of Acer catalpifolium Reveals Evolutionary History of Endangered Species. Genome Biol Evol. 2021[34878129]
Acer negundo Box elder (Acer negundo) is a species of eudicot in the family Sapindaceae (soapberry family) . Common Name : Box elder Lineage : Aceraceae family Chinese Name : 梣叶槭 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 4023 Genome Size(Mb): 442.4 Transcript Number: 30491 Gene Number: 30488 Reference : McEvoy SL, Sezen UU, Trouern?Trend A, et al. Strategies of tolerance reflected in two North American maple genomes. The Plant Journal 2022[34967059]
Acer pseudosieboldianum Acer pseudosieboldianum is a species of eudicot in the family Sapindaceae (soapberry family) . Common Name : Korean maple Lineage : Aceraceae family Chinese Name : 紫花槭 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 47968 Genome Size(Mb): 690.4 Transcript Number: 32430 Gene Number: 29679 Reference : Li X, Cai K, Han Z, et al. Chromosome-Level Genome Assembly for Acer pseudosieboldianum and Highlights to Mechanisms for Leaf Color and Shape Change. Front Plant Sci. 2022[35310631]
Acer saccharum Sugar maple (Acer saccharum) is a species of eudicot in the family Sapindaceae (soapberry family) . Common Name : Sugar maple Lineage : Aceraceae family Chinese Name : 糖槭 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 4024 Genome Size(Mb): 626.5 Transcript Number: 40074 Gene Number: 40070 Reference : McEvoy SL, Sezen UU, Trouern?Trend A, et al. Strategies of tolerance reflected in two North American maple genomes. The Plant Journal 2022[34967059]
Acer truncatum Shantung maple (Acer truncatum) is a species of eudicot in the family Sapindaceae (soapberry family) . Common Name : Shantung maple Lineage : Aceraceae family Chinese Name : 元宝枫 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 47965 Genome Size(Mb): 633.3 Transcript Number: 28438 Gene Number: 28438 Reference : Ma Q, Sun T, Li S, et al. The Acer truncatum genome provides insights into nervonic acid biosynthesis. Plant J. 2020[32772482]
Acer yangbiense Acer yangbiense is a species of eudicot in the family Sapindaceae (soapberry family) . Lineage : Aceraceae family Chinese Name : 漾濞槭 Reference Assembly Version: AYv1.1 Level : chromosome Taxonomy : 1000413 Genome Size(Mb): 665.9 Transcript Number: 28308 Gene Number: 28339 Reference : Yang J, Wariss HM, Tao L, et al. De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China. Gigascience. 2019[31307060]
Actinidia chinensis Golden kiwifruit (Actinidia chinensis) is a species of eudicot in the family Actinidiaceae (Chinese gooseberry family) . Common Name : Golden kiwifruit Lineage : Actinidiaceae family Chinese Name : 中华猕猴桃 Reference Assembly Version: Kiwifruit_v1 Level : scaffold Taxonomy : 3625 Genome Size(Mb): 553.84 Transcript Number: 33115 Gene Number: 33044 Reference : Huang S, Ding J, Deng D, et al. Draft genome of the kiwifruit Actinidia chinensis. Nat Commun. 2013[24136039]
Amborella trichopoda Amborella trichopoda is species of angiosperm in family Amborellaceae. Lineage : Amborellaceae family Chinese Name : 无油樟 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 13333 Genome Size(Mb): 706.33 Transcript Number: 26846 Gene Number: 26846 Reference : Amborella Genome Project. The Amborella genome and the evolution of flowering plants. Science 2013[24357323]
Betula pendula European white birch (Betula pendula) is a species of eudicot in the family Betulaceae (birch family) . Common Name : European white birch Lineage : Betulaceae family Chinese Name : 垂枝桦 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 3505 Genome Size(Mb): 435.9 Transcript Number: 29439 Gene Number: 28150
Camellia sinensis Black tea (Camellia sinensis) is a species of eudicot in the family Theaceae (tea family) . Common Name : Black tea Lineage : Theaceae family Chinese Name : 茶 Reference Assembly Version: AHAU_CSS_1 Level : chromosome Taxonomy : 4442 Genome Size(Mb): 2938.8 Transcript Number: 50525 Gene Number: 50525 Reference : Wei C, Yang H, Wang S, et al. Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality. Proc Natl Acad Sci U S A. 2018[29678829]
Cinnamomum camphora Camphor tree (Cinnamomum camphora) is a species of flowering plant in the family Lauraceae (laurel family) . Common Name : Camphor tree Lineage : Lauraceae family Chinese Name : 香樟 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 13429 Genome Size(Mb): 738.1 Transcript Number: 28261 Gene Number: 28261 Reference : Sun WH, Xiang S, Zhang QG, et al. The camphor tree genome enhances the understanding of magnoliid evolution. J Genet Genomics. 2022[34798358]
Cinnamomum kanehirae Cinnamomum micranthum f. kanehirae is a forma of Cinnamomum micranthum. Lineage : Lauraceae family Chinese Name : 牛樟 Reference Assembly Version: V3.0 Level : scaffold Taxonomy : 337451 Genome Size(Mb): 730.4 Transcript Number: 27899 Gene Number: 27899
Cinnamomum micranthum Cinnamomum micranthum is a species of flowering plant in the family Lauraceae (laurel family) . Lineage : Lauraceae family Chinese Name : 沉水樟 Reference Assembly Version: ASBRC_Ckan_1.0 Level : scaffold Taxonomy : 337465 Genome Size(Mb): 730.4 Transcript Number: 27885 Gene Number: 27885 Reference : Chaw SM, Liu YC, Wu YW, et al. Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. Nat Plants. 2019[30626928]
Citrus clementina Clementine (Citrus clementina) is a species of eudicot in the family Rutaceae (rue family) . Common Name : Clementine Lineage : Rutaceae family Chinese Name : 克莱门柚 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 85681 Genome Size(Mb): 301.4 Transcript Number: 33929 Gene Number: 24532 Reference : Wu GA, Terol J, Ibanez V, et al. Genomics of the origin and evolution of Citrus. Nature 2018[29414943]
Citrus sinensis Sweet orange (Citrus sinensis) is a species of eudicot in the family Rutaceae (rue family) . Common Name : Sweet orange Lineage : Rutaceae family Chinese Name : 甜橙 Reference Assembly Version: V1.1 Level : scaffold Taxonomy : 2711 Genome Size(Mb): 319.2 Transcript Number: 46147 Gene Number: 25378 Reference : Wu GA, Prochnik S, Jenkins J, et al. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nat Biotechnol 2014[24908277]
Diospyros oleifera Cheng Diospyros oleifera Cheng is a species of diploid in the family Persimmon. Lineage : Persimmon family Chinese Name : 油柿 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 227308 Genome Size(Mb): 856.4 Transcript Number: 26164 Gene Number: 26163 Reference : Zhu Q, Xu Y, Yang Y, et al. The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution. Hortic Res 2019[31871686]
Eucalyptus grandis Rose gum (Eucalyptus grandis) is a species of eudicot in the family Myrtaceae (myrtle family) . Common Name : Rose gum Lineage : Myrtaceae family Chinese Name : 大桉 Reference Assembly Version: Egrandis1_0 Level : scaffold Taxonomy : 71139 Genome Size(Mb): 691.3 Transcript Number: 46920 Gene Number: 36779 Reference : Jones A, Torkel C, Stanley D, Nasim J, Borevitz J, Schwessinger B. High-molecular weight DNA extraction, clean-up and size selection for long-read sequencing. PLoS One. 2021[34264958]
Eucommia ulmoides Eucommia ulmoides is a species of eudicot in the family Eucommiaceae. Lineage : Eucommiaceae family Chinese Name : 杜仲 Reference Assembly Version: EU17 Level : scaffold Taxonomy : 4392 Genome Size(Mb): 947.9 Transcript Number: 25477 Gene Number: 25474 Reference : Li Y, Wei H, Yang J, et al. High-quality de novo assembly of the Eucommia ulmoides haploid genome provides new insights into evolution and rubber biosynthesis. Hortic Res. 2020[33328448]
Fagus sylvatica European beech (Fagus sylvatica) is a species of eudicot in the family Fagaceae (beech family) . Common Name : European beech Lineage : Fagaceae family Chinese Name : 欧洲山毛榉 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 28930 Genome Size(Mb): 19.7 Transcript Number: 62085 Gene Number: 62012
Fraxinus excelsior European ash (Fraxinus excelsior) is a species of eudicot in the family Oleaceae (olive famly) . Common Name : European ash Lineage : Oleaceae family Chinese Name : 欧洲白蜡 Reference Assembly Version: V0.5 Level : scaffold Taxonomy : 38873 Genome Size(Mb): 867.5 Transcript Number: 50841 Gene Number: 38949
Ginkgo biloba Maidenhair tree (Ginkgo biloba) is a species of seed plant in the family Ginkgoaceae. Common Name : Maidenhair tree Lineage : Ginkgoaceae family Chinese Name : 银杏 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 3311 Genome Size(Mb): 9882.9 Transcript Number: 27836 Gene Number: 27836 Reference : Liu H, Wang X, Wang G, et al. The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution. Nat Plants. 2021[34135482]
Juglans cathayensis Juglans cathayensis is a species of eudicot in the family Juglandaceae (walnut family) . Lineage : Juglandaceae family Chinese Name : 野核桃 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 91213 Genome Size(Mb): 493.1 Transcript Number: 39905 Gene Number: 39905 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Juglans hindsii Juglans hindsii is a species of eudicot in the family Juglandaceae (walnut family) . Lineage : Juglandaceae family Chinese Name : 函兹核桃 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 91216 Genome Size(Mb): 517 Transcript Number: 39941 Gene Number: 39941 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Juglans mandshurica Juglans mandshurica is a species of eudicot in the family Juglandaceae (walnut family) . Lineage : Juglandaceae family Chinese Name : 胡桃楸 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 91218 Genome Size(Mb): 490.2 Transcript Number: 40331 Gene Number: 40331 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Juglans microcarpa Juglans microcarpa is a species of eudicot in the family Juglandaceae (walnut family) . Lineage : Juglandaceae family Chinese Name : 小果黑核桃 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 91219 Genome Size(Mb): 522.8 Transcript Number: 40378 Gene Number: 40378 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Juglans nigra Black walnut (Juglans nigra) is a species of eudicot in the family Juglandaceae (walnut family) . Common Name : Black walnut Lineage : Juglandaceae family Chinese Name : 黑核桃 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 16719 Genome Size(Mb): 540.8 Transcript Number: 30261 Gene Number: 30261 Reference : Zhou H, Yan F, Hao F, et al. Pan-genome and transcriptome analyses provide insights into genomic variation and differential gene expression profiles related to disease resistance and fatty acid biosynthesis in eastern black walnut (Juglans nigra). Hortic Res. 2023[36968185]
Juglans regia English walnut (Juglans regia) is a species of eudicot in the family Juglandaceae (walnut family) . Common Name : English walnut Lineage : Juglandaceae family Chinese Name : 核桃 Reference Assembly Version: V2.0 Level : chromosome Taxonomy : 51240 Genome Size(Mb): 540.8 Transcript Number: 39414 Gene Number: 39414 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Juglans sigillata Juglans sigillata is a species of eudicot in the family Juglandaceae (walnut family) . Lineage : Juglandaceae family Chinese Name : 泡核桃 Reference Assembly Version: V1.0 Level : chromosome Taxonomy : 224355 Genome Size(Mb): 520.2 Transcript Number: 41926 Gene Number: 41926 Reference : Zhang et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplicationon. Plant Biotechnology Journal. 2020[32004401]
Liriodendron chinense Liriodendron chinense is a species of flowering plant in the family Magnoliaceae (magnolia family) . Lineage : Magnoliaceae family Chinese Name : 鹅掌楸 Reference Assembly Version: V1.0 Level : scaffold Taxonomy : 3414 Genome Size(Mb): 1742.4 Transcript Number: 35269 Gene Number: 35269
Malus domestica Apple (Malus domestica) is a species of eudicot in the family Rosaceae (rose family) . Common Name : Apple Lineage : Rosaceae family Chinese Name : 苹果 Reference Assembly Version: MalDomGD1.0 Level : chromosome Taxonomy : 3750 Genome Size(Mb): 709.6 Transcript Number: 45116 Gene Number: 45116 Reference : Goremykin VV, Lockhart PJ, Viola R, Velasco R. The mitochondrial genome of Malus domestica and the import-driven hypothesis of mitochondrial genome expansion in seed plants. Plant J. 2012[22469001]
Quercus lobata Valley oak (Quercus lobata) is a species of eudicot in the family Fagaceae (beech family) . Common Name : Valley oak Lineage : Fagaceae family Chinese Name : 白栎 Reference Assembly Version: V3.0 Level : chromosome Taxonomy : 97700 Genome Size(Mb): 846.7 Transcript Number: 39373 Gene Number: 39373
Quercus robur English oak (Quercus robur) is a species of eudicot in the family Fagaceae (beech family) . Common Name : English oak Lineage : Fagaceae family Chinese Name : 夏栎 Reference Assembly Version: vPM1N Level : chromosome Taxonomy : 38942 Genome Size(Mb): 556.4 Transcript Number: 25808 Gene Number: 25808
Salix brachista Salix brachista is a species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 小垫柳 Reference Assembly Version: ASM907833v1 Level : chromosome Taxonomy : 2182728 Genome Size(Mb): 339.6 Transcript Number: 30209 Gene Number: 30209 Reference : Chen JH, Huang Y, Brachi B, et al. Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot. Nat Commun. 2019[31745089]
Salix dunnii Salix dunnii is a species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 长梗柳 Reference Assembly Version: SDv1.1 Level : chromosome Taxonomy : 1413687 Genome Size(Mb): 328.1 Transcript Number: 29822 Gene Number: 29822 Reference : He L, Jia KH, Zhang RG, et al. Chromosome-scale assembly of the genome of Salix dunnii reveals a male-heterogametic sex determination system on chromosome 7. Mol Ecol Resour. 2021[33609314]
Salix purpurea Purple osier (Salix purpurea) is a species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 紫红柳 Reference Assembly Version: v5.1 Level : chromosome Taxonomy : 77065 Genome Size(Mb): 329.3 Transcript Number: 57462 Gene Number: 35125 Reference : Zhou R, Macaya-Sanz D, Carlson CH, et al. A willow sex chromosome reveals convergent evolution of complex palindromic repeats. Genome Biol 2020[32059685]
Salix suchowensis Salix suchowensis is a species of eudicot in the family Salicaceae (willow family) . Lineage : Salicaceae family Chinese Name : 簸箕柳 Reference Assembly Version: ASM1755242v1 Level : chromosome Taxonomy : 1278906 Genome Size(Mb): 355.7 Transcript Number: 36449 Gene Number: 36449 Reference : Wei S, Yang Y, Yin T. The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution. Hortic Res. 2020[32257231]
Sequoia sempervirens California redwood (Sequoia sempervirens) is a species of seed plant in the family Cupressaceae (cypress family) . Common Name : California redwood Lineage : Taxodiaceae family Chinese Name : 北美红杉 Reference Assembly Version: V2.1 Level : scaffold Taxonomy : 28980 Genome Size(Mb): 26549.7 Transcript Number: 118906 Gene Number: 118780
Vitis vinifera Wine grape (Vitis vinifera) is a species of eudicot in the family Vitaceae (grape family) . Common Name : Wine grape Lineage : Vitaceae family Chinese Name : 葡萄 Reference Assembly Version: V2.1 Level : chromosome Taxonomy : 29760 Genome Size(Mb): 486.2 Transcript Number: 26346 Gene Number: 26346 Reference : Jaillon O, Aury J-M, Noel B, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007[17721507]
Ziziphus jujuba Common jujube (Ziziphus jujuba) is a species of eudicot in the family Rhamnaceae (buckthorn family) . Common Name : Common jujube Lineage : Rhamnaceae family Chinese Name : 酸枣 Reference Assembly Version: V1.1 Level : scaffold Taxonomy : 326968 Genome Size(Mb): 405.6 Transcript Number: 45845 Gene Number: 31961