LncExpDB

Expression Database of Human Long non-coding RNAs

Introduction

LncExpDB is a comprehensive database for lncRNA expression. It covers expression profiles of lncRNA genes across various biological contexts, predicts potential functional lncRNAs and their interacting partners, and thus provides essential guidance on experimental design.

LncExpDB currently houses expression profiles of 101,293 high-quality human lncRNA genes derived from 2,485 samples of 361 biological conditions across nine biological contexts. Consequently, LncExpDB estimates lncRNA genes’ expression reliability and capacities, identifies 26,565 featured genes, and further obtains 28,443,865 lncRNA-mRNA interactions.

Examples:  HSALNG0134930;  TUG1;  HSALNT0276950;  ENST00000602393.1;  NONHSAT119666.2;  HOTAIRM1:4;  MSTRG.7221.4;  CHS.35608.18; 

Resources

Normal Tissue/Cell Line

232 samples, 2 projects
7,498 featured genes

Organ Development

313 samples, 1 project
7,922 featured genes

Preimplantation Embryo

125 samples, 2 projects
4,343 featured genes

Cell Differentiation

297 samples, 1 project
1,232 featured genes

Subcellular Localization

36 samples, 1 project
5,292 featured genes

Exosome

97 samples, 2 projects
1,538 featured genes

Cancer Cell Line

658 samples, 1 project
2,907 featured genes

Virus Infection

66 samples, 2 projects
985 featured genes

Circadian Rhythm

153 samples, 1 project
1,740 featured genes

Immunotherapy

127 samples, 4 projects
810 featured genes

Aging

91 samples, 3 projects
395 featured genes

Metabolic Diseases

290 saplmes, 4 projects
4,073 featured genes

Publications

  • LncExpDB: an expression database of human long non-coding RNAs Nucleic Acids Res 2021. [PMID=33045751]

    • Related publications:
  • Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021 Nucleic Acids Res 2021. [PMID=33175170]

    • Related Resources

  • LncBook
  • LncRNAWiki 1.0
  • LncRNAWiki 2.0
  • LGC

    • News and Update

    09/10/2024 - version 1.1

    • Three new biological contexts: "Immunotherapy Response", "Aging", and "Metabolic Diseases" introduced.
    • "Pipeline" module to share commands and parameters used for lncRNA expression profiling analysis for users' reference.

    08/14/2020 - version 1.0

    • Added reference gene model, expression profiles, and co-expression matrix to the Downloads page.

    Last update: Jan 2021 (version 1.0)