LncExpDB identifies and characterizes stage-specific genes, consistently expressed genes, and dynamically expressed genes during preimplantation embryo development, and further predicts lncRNA-mRNA interactions based on co-expression networks.
In addition to the defined featured genes, you can also explore a group of genes of interest with customized filters.
Gene ID | Gene Symbol | Max TPM | Min TPM | Median | Average TPM | Breadth | P Value | K = 5 | K = 6 | K = 7 | K = 8 | Chart | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HSALNG0000002 | N/A | 0.696 | Morulae | 1.995 | 0.302 | 0.619 | 0.805 | 0.724 | 5 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A | |
| HSALNG0000009 | N/A | 0.767 | Oocyte | 194.811 | 0.016 | 49.290 | 66.757 | 1.151 | 5 | 0.917 | 0.000 | Cluster 1 | Cluster 1 | Cluster 1 | Cluster 1 | Cluster 1 | |
| HSALNG0000010 | N/A | 0.803 | 2-Cell | 3.657 | 0.000 | 0.373 | 1.139 | 1.341 | 3 | 0.704 | 0.000 | Cluster 1 | Cluster 2 | Cluster 2 | Cluster 2 | Cluster 2 | |
| HSALNG0142075 | N/A | 0.517 | Zygote | 90.355 | 0.010 | 76.224 | 50.297 | 0.876 | 6 | 0.894 | 0.000 | Cluster 1 | Cluster 1 | Cluster 1 | Cluster 1 | Cluster 1 | |
| HSALNG0141642 | N/A | 0.637 | 4-Cell | 7.256 | 0.000 | 3.039 | 3.295 | 0.877 | 5 | 0.716 | 0.000 | Cluster 2 | Cluster 3 | Cluster 3 | Cluster 3 | Cluster 3 | |
| HSALNG0000028 | N/A | 0.757 | Morulae | 6049.348 | 99.091 | 1657.308 | 2124.947 | 0.917 | 7 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A | |
| HSALNG0000030 | N/A | 0.526 | Lateblastocyst | 68.928 | 2.488 | 40.507 | 37.872 | 0.597 | 7 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A | |
| HSALNG0000031 | N/A | 0.879 | Lateblastocyst | 1.031 | 0.000 | 0.113 | 0.254 | 1.515 | 1 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A | |
| HSALNG0000041 | LINC01128,FAM87B | 0.718 | Oocyte | 34.030 | 1.755 | 10.774 | 13.091 | 0.882 | 7 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A | |
| HSALNG0000045 | N/A | 0.759 | Oocyte | 9.288 | 0.000 | 2.689 | 3.243 | 1.009 | 5 | -1.000 | -1.000 | N/A | N/A | N/A | N/A | N/A |
LncRNA ID | LncRNA Symbol | LncRNA Location | PCG Symbol | PCG Location | P value | |||
|---|---|---|---|---|---|---|---|---|
| HSALNG0000009 | N/A | chr1:77506-79261(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.792 | 0.000 | 3667199 |
| HSALNG0000010 | N/A | chr1:79414-80968(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.535 | 0.000 | 3665492 |
| HSALNG0142075 | N/A | chr1:89295-133723(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.950 | 0.000 | 3612737 |
| HSALNG0141642 | N/A | chr1:266855-268655(+) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.768 | 0.000 | 3477805 |
| HSALNG0000046 | FAM41C | chr1:864994-879212(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.775 | 0.000 | 2867248 |
| HSALNG0145616 | N/A | chr18:68278287-68278636(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | -0.594 | 0.000 | Trans |
| HSALNG0004348 | N/A | chr1:69377411-69428313(-) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.827 | 0.000 | 65605768 |
| HSALNG0009189 | N/A | chr1:189149602-189702376(+) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.856 | 0.000 | 185377952 |
| HSALNG0009338 | LINC01031 | chr1:193303887-194239101(+) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.906 | 0.000 | 189532240 |
| HSALNG0009643 | N/A | chr1:201399454-201418899(+) | ENSG00000162592.10 | CCDC27 | chr1:3746460-3771645(+) | 0.863 | 0.000 | 197627808 |