Spatiotemporal Dynamics

Frequency

Default 0.0005 0.01 0.1 0.5

Order by variance

Default ASC DESC

Gene name/Regions

All 5'UTR Intergenic ORF1ab S ORF3a E M ORF6 ORF7a ORF8 N ORF10 3'UTR

Mutation Type

All intergenic_variant upstream_gene_variant start_lost coding_sequence_variant inframe_deletion frameshift_variant missense_variant stop_gained synonymous_variant protein_altering_variant inframe_insertion - stop_lost stop_retained_variant downstream_gene_variant

TRS

All TRS:orf1ab TRS:S TRS:ORF3a TRS:E TRS:M TRS:ORF6 TRS:ORF7a TRS:ORF8 TRS:N TRS:ORF10 Furin:S

Time Variation Area Variation Area Variation（China） Virus Strain Variation

By calculating the population frequency of mutation sites at each time point, the dynamic trend of the mutation sites over time is displayed in the form of heatmap. For example, population frequency of site 11,083 located in gene ORF1ab gradually increased from 0 to 22%, and then decreased to 8% as the epidemic progressed (see the area that gradually changes from blue to red).

By calculating the population frequency in each country, the dynamic trend of variant sites in different regions was displayed in the form of heatmap.

By calculating the population frequency in China, the dynamic trend of variant sites in different regions was displayed in the form of heatmap.

Monitoring global virus strain changes by counting cumulative virus strains

RCoV19 - Spatiotemporal Dynamics