ORRM3 - Plant Editosome Database - CNCB-NGDC

Summary

Editing Factor: ORRM3
Synonym: Organelle RRM Protein 3; GLYCINE-RICH RNA-BINDING PROTEIN 3; GR-RBP3; RBGA7; RNA-BINDING GLYCINE-RICH PROTEIN A7
Description: Encoding a RRM-containing protein required for mitochondrial RNA editing
Protein Family: ORRM
Subclass: NA
Physical Interaction: RIP1; ORRM2; ORRM3
Construct Structure: NA
Gene ID & Species: AT5G61030 (Arabidopsis thaliana)
Edited Gene(s): mttB    ccmB    rps12    nad4    nad5    atp1    cob    nad9    ccmC    cox2    rps3    nad7    nad1    orf240A    orf114    nad6    rps4    nad2    ccmFc    rpl16    pseudo-rps14    rps7    rpl5    nad3
Editing Type(s): C-to-U (124)
Publication(s): [1] Two RNA recognition motif-containing proteins are plant mitochondrial editing factors., Nucleic acids research, 2015. [PMID=25800738]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Nuclear Genome Organelle Genome Other Position Region Other Position Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT5G61030 Mitochondrion atp1 1110 CDS NA NA NA NA C-to-U GUC=>GUU V=>V Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq9.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 406 CDS NA NA NA NA C-to-U CUG=>UUG L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq34.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 75 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq9.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq15.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 78 CDS NA NA NA NA C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 80 CDS NA NA NA NA C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq86.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 184 CDS NA NA NA NA C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 252 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq25.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq35.00%LowDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq45.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 270 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq15.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 381 CDS NA NA NA NA C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq18.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq21.00%LowDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq32.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 463 CDS NA NA NA NA C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq66.00%HighDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq85.00%HighDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq95.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 618 CDS NA NA NA NA C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq46.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq70.00%HighDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq93.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFc 1215 CDS NA NA NA NA C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq67.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFc 315 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFc 406 CDS NA NA NA NA C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq84.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion cob 114 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion cox2 250 CDS NA NA NA NA C-to-U CUU=>UUU L=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq8.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 422 CDS NA NA NA NA C-to-U CCC=>CUC P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 59 CDS NA NA NA NA C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq92.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 673 CDS NA NA NA NA C-to-U CCG=>UCG P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 82 CDS NA NA NA NA C-to-U CGA=>UGA R=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad1 40 CDS NA NA NA NA C-to-U CUA=>UUA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq13.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq10.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq19.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad2 336 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad3 26 CDS NA NA NA NA C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq93.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1101 CDS NA NA NA NA C-to-U UAC=>UAU Y=>Y Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq86.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1131 CDS NA NA NA NA C-to-U CUC/CUC=>CUU/UUU L=>L/F Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq12.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1194 CDS NA NA NA NA C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq14.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 261 CDS NA NA NA NA C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 636 CDS NA NA NA NA C-to-U CGC=>CGU R=>R Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq10.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1494 CDS NA NA NA NA C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq4.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1665 CDS NA NA NA NA C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq12.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1929 CDS NA NA NA NA C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq8.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1933 CDS NA NA NA NA C-to-U CUA=>UUA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 609 CDS NA NA NA NA C-to-U GCC/GCC=>GCU/GUU A=>A/V Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq79.00%HighDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq77.00%HighDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 NA Intron NA NA Genomic position 141966 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq10.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq16.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq40.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad6 NA 5'UTR NA NA NA -73 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq54.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq63.00%HighDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 1050 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq9.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq14.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq17.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 213 CDS NA NA NA NA C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq98.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 789 CDS NA NA NA NA C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq19.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq14.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq25.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 795 CDS NA NA NA NA C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq84.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 963 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq99.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 NA Intron NA NA Genomic position 134282
134309
C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq95.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad9 517 CDS NA NA NA NA C-to-U CAA=>UAA Q=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion orf114 327 CDS NA NA NA NA C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq36.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq58.00%MediumDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays17.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksPPE and bulk sequencing assays32.00%LowNone25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq65.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion orf240A 199 CDS NA NA NA NA C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq21.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq29.00%LowDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq43.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion pseudo-rps14 99 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq17.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rpl16 NA 3'UTR NA NA NA 72 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rpl5 59 CDS NA NA NA NA C-to-U CCG/CCG=>CUG/UUG P=>L/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq78.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps12 328 CDS NA NA NA NA C-to-U CGA=>UGA R=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq4.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps3 1344 CDS NA NA NA NA C-to-U AGC=>AGU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq8.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq13.00%PoorDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays11.00%PoorDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksPPE and bulk sequencing assays38.00%LowNone25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq45.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps3 270 CDS NA NA NA NA C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps4 711 CDS NA NA NA NA C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps4 77 CDS NA NA NA NA C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq59.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq68.00%HighDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays32.00%LowDecreased25800738
NAWTControlControlControlNormalLeaf5 weeksPPE and bulk sequencing assays66.00%HighNone25800738
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq78.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps7 NA 5'UTR NA NA NA -217 C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTControlControlControlNormalLeaf5 weeksSTS-PCRseq18.00%PoorNone25800738
Last update: Feb 2026 (version 2.0)