ORRM3 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: ORRM3
Synonym: Organelle RRM Protein 3, GLYCINE-RICH RNA-BINDING PROTEIN 3, GR-RBP3, RBGA7, RNA-BINDING GLYCINE-RICH PROTEIN A7
Description: Encodes a RRM-containing protein required for mitochondrial RNA editing.
Protein Family: ORRM
Subclass: NA
Construct Structure: RRM
Gene ID & Species: AT5G61030 (Arabidopsis thaliana)
Edited Gene(s): mttB    ccmB    rps12    nad4    nad5    atp1    cob    nad9    ccmC    cox2    rps3    nad7    nad1    orf240A    orf114    nad6    rps4    nad2    ccmFC    rpl16    pseudo-rps14    rps7    rpl5    nad3
Editing Type(s): C-to-U (124)
Publication(s): [1] Two RNA recognition motif-containing proteins are plant mitochondrial editing factors, Nucleic Acids Research, 2015. [PMID=25800738]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT5G61030 Mitochondrion atp1 1110 CDS C-to-U GUC=>GUU V=>V Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq9.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 75 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq9.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq15.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 78 CDS C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 80 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq86.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmB 406 CDS C-to-U CUG=>UUG L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq34.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 184 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 252 CDS C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq25.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq35.00%LowDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq45.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 270 CDS C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq15.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 381 CDS C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq18.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq21.00%LowDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq32.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 463 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq66.00%HighDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq85.00%HighDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq95.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmC 618 CDS C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq46.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq70.00%HighDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq93.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFC 315 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFC 406 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq84.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion ccmFC 1215 CDS C-to-U ACC=>ACU T=>T Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq67.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion cob 114 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion cox2 250 CDS C-to-U CUU=>UUU L=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq8.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 59 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq92.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 82 CDS C-to-U CGA=>UGA R=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq0.00%UneditedDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 422 CDS C-to-U CCC=>CUC P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion mttB 673 CDS C-to-U CCG=>UCG P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad1 40 CDS C-to-U CUA=>UUA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq13.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq10.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq19.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad2 336 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad3 26 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq93.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 261 CDS C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 636 CDS C-to-U CGC=>CGU R=>R Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq10.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1101 CDS C-to-U UAC=>UAU Y=>Y Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq86.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1131 CDS C-to-U CUC/CUC=>CUU/UUU L=>L/F Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq12.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad4 1194 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq6.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq14.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 609 CDS C-to-U GCC/GCC=>GCU/GUU A=>A/V Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq79.00%HighDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq77.00%HighDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1494 CDS C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq4.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1665 CDS C-to-U CUC=>CUU L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq5.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq12.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1929 CDS C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq4.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq8.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 1933 CDS C-to-U CUA=>UUA L=>L Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad5 141966 Intronic C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq10.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq16.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq40.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad6 -73 5'UTR C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq54.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq63.00%HighDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq87.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 213 CDS C-to-U GAC=>GAU D=>D Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq98.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 789 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq19.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq14.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq25.00%LowNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 795 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq84.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 963 CDS C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq99.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 1050 CDS C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq9.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq14.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq17.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 134282 Intronic C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad7 134309 Intronic C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq95.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion nad9 517 CDS C-to-U CAA=>UAA Q=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq3.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq2.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq5.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion orf114 327 CDS C-to-U UUC=>UUU F=>F Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq36.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq58.00%MediumDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays17.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksPPE and bulk sequencing assays32.00%LowNone25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq65.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion orf240A 199 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq21.00%LowDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq29.00%LowDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq43.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion pseudo-rps14 99 CDS C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq17.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rpl16 72 3'UTR C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rpl5 59 CDS C-to-U CCG/CCG=>CUG/UUG P=>L/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq78.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps12 328 CDS C-to-U CGA=>UGA R=>Stop codon Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq1.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq4.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps3 270 CDS C-to-U CCC=>CCU P=>P Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq3.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps3 1344 CDS C-to-U AGC=>AGU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq8.00%PoorDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq13.00%PoorDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays11.00%PoorDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksPPE and bulk sequencing assays38.00%LowNone25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq45.00%MediumNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps4 77 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAORRM3 sil_1Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq59.00%MediumDecreased25800738
NAORRM3 sil_2Virus Induced Gene Silencing (VIGS)NANANo macroscopic phenotypicLeaf5 weeksSTS-PCRseq68.00%HighDecreased25800738
SALK 038244orrm3-1T-DNA InsertionNAHomozygous; KnockoutThe homozygous mutant does not show any obvious morphological defect compared with its wild-type siblingLeaf5 weeksPPE and bulk sequencing assays32.00%LowDecreased25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksPPE and bulk sequencing assays66.00%HighNone25800738
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq78.00%HighNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps4 711 CDS C-to-U UCC=>UCU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq7.00%PoorNone25800738
Arabidopsis thaliana AT5G61030 Mitochondrion rps7 -217 5'UTR C-to-U NA=>NA NA=>NA NA
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeaf5 weeksSTS-PCRseq18.00%PoorNone25800738
Last update: Jul 2021 (version 1.0)