cob - Plant Editosome Database - BIG Data Center

Summary

Gene: cob
Function: Other
Species: 20
Editing Factors:17 (DYW2, EMP21, EMP5, MEF29, MEF35, MEF37, MEF7, MORF3, MORF8, NUWA, ORRM2, ORRM3, ORRM4, OTP90, PGN, PPR2263, SlORRM4)
Editing Types:
C-to-U (457)
U-to-C (45)
Editing Events: 510 (C-to-U: 457   U-to-C: 45   NA: 8)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Arabidopsis thalianaMitochondrion14
C-to-U: 14
60520
60559
60802
61087
61142
61216
61318
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
CCA=>CUA
CAU=>UAU
CUU=>UUU
CAU=>UAU
CAC=>UAC
CCA=>CUA
CCU=>UCU
CAU=>UAU
CAC=>UAC
CAU=>UAU
CUU=>UUU
CCU=>UCU
H=>Y
H=>Y
P=>L
H=>Y
L=>F
H=>Y
H=>Y
P=>L
P=>S
H=>Y
H=>Y
H=>Y
L=>F
P=>S
Asclepias syriacaMitochondrion2
NA: 2
433337-434518CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta macrocarpaMitochondrion13
C-to-U: 13
367812
367891
368048
368064
368164
368293
368404
368558
368614
368647
368674
368686
368930
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CUC
CUC=>UUC
CAU=>UAU
CCC=>UCC
CUU=>UUU
ACG=>AUG
CCU=>UCU
CAU=>UAU
CGG=>UGG
CUC=>CUU
UAC=>UAU
CAC=>UAC
CCC=>CCU
P=>L
L=>F
H=>Y
P=>S
L=>F
T=>M
P=>S
H=>Y
R=>W
L=>L
Y=>Y
H=>Y
P=>P
Beta vulgaris subsp. maritimaMitochondrion13
C-to-U: 13
109048
109127
109284
109300
109400
109529
109640
109794
109850
109883
109910
109922
110166
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCU=>UCU
CUC=>CUU
CGG=>UGG
CAU=>UAU
CCC=>CUC
ACG=>AUG
CAC=>UAC
CCC=>CCU
CUC=>UUC
CCC=>UCC
UAC=>UAU
CAU=>UAU
CUU=>UUU
P=>S
L=>L
R=>W
H=>Y
P=>L
T=>M
H=>Y
P=>P
L=>F
P=>S
Y=>Y
H=>Y
L=>F
Beta vulgaris subsp. vulgarisMitochondrion13
C-to-U: 13
179118
179197
179354
179370
179470
179599
179710
179864
179920
179953
179980
179992
180236
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCU=>UCU
CAC=>UAC
ACG=>AUG
CUC=>UUC
CGG=>UGG
CUU=>UUU
CCC=>UCC
CCC=>CUC
CCC=>CCU
UAC=>UAU
CAU=>UAU
CAU=>UAU
CUC=>CUU
P=>S
H=>Y
T=>M
L=>F
R=>W
L=>F
P=>S
P=>L
P=>P
Y=>Y
H=>Y
H=>Y
L=>L
Brassica napusMitochondrion16
C-to-U: 16
204915
205183
205222
205465
205750
205805
205879
205981
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
CAA=>CAU
CAA=>CAU
CCA=>CUA
CCA=>CUA
CCU=>UCU
CCU=>UCU
CAU=>UAU
CAU=>UAU
CUU=>UUU
CUU=>UUU
CAC=>UAC
CAC=>UAC
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
Q=>H
Q=>H
P=>L
P=>L
P=>S
P=>S
H=>Y
H=>Y
L=>F
L=>F
H=>Y
H=>Y
H=>Y
H=>Y
Citrullus lanatusMitochondrion13
C-to-U: 13
275937
276105
276117
276144
276177
276226
276387
276627
276672
276727
276801
276903
276943
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
CCA=>CYA
CGG=>YGG
CCG=>CUG
CAC=>YAC
CUC=>UUC
CCG=>YCG
CAU=>UAU
CCC=>YCC
CCU=>YCU
CAC=>YAC
CAU=>YAU
CAU=>YAU
T=>I
P=>P/L
R=>R/W
P=>L
H=>H/Y
L=>F
P=>P/S
H=>Y
P=>P/S
P=>P/S
H=>H/Y
H=>H/Y
H=>H/Y
Cucurbita pepoMitochondrion13
C-to-U: 13
84685
84853
84865
84892
84925
84974
85135
85375
85420
85475
85549
85651
85691
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CGG=>UGG
CAC=>YAC
CCA=>CYA
ACA=>AUA
CCU=>YCU
CCG=>CUG
CAU=>UAU
CAC=>UAC
CUC=>UUC
CCG=>UCG
CCC=>YCC
CAU=>YAU
H=>Y
R=>W
H=>H/Y
P=>P/L
T=>I
P=>P/S
P=>L
H=>Y
H=>Y
L=>F
P=>S
P=>P/S
H=>H/Y
Helianthus annuusMitochondrion2
NA: 2
188450-189643CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lotus japonicusMitochondrion30
C-to-U: 30
273555
273595
273598
273664
273697
273771
273826
273871
274111
274260
274272
274321
274354
274381
274393
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
CGC=>UGC
CAU=>UAU
CAC=>UAC
CCA=>CUA
CAC=>UAC
CGG=>UGG
CCU=>UCU
CCG=>CUG
CCU=>CUU
CUC=>UUC
CAU=>UAU
CCC=>UCC
CAC=>UAC
CAU=>UAU
ACA=>AUA
CCU=>UCU
CCA=>CUA
CAC=>UAC
CAU=>UAU
CAU=>UAU
CCG=>CUG
CGC=>UGC
CGG=>UGG
CCU=>UCU
CCC=>UCC
CCU=>CUU
CUC=>UUC
ACA=>AUA
CCU=>UCU
H=>Y
R=>C
H=>Y
H=>Y
P=>L
H=>Y
R=>W
P=>S
P=>L
P=>L
L=>F
H=>Y
P=>S
H=>Y
H=>Y
T=>I
P=>S
P=>L
H=>Y
H=>Y
H=>Y
P=>L
R=>C
R=>W
P=>S
P=>S
P=>L
L=>F
T=>I
P=>S
Millettia pinnataMitochondrion28
C-to-U: 28
379990
380002
380029
380062
380111
380272
380512
380557
380612
380686
380719
380785
380788
380828
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
ACA=>AUA
CCG=>CUG
CAU=>UAU
CGG=>UGG
CCU=>UCU
CAC=>UAC
CCG=>CUG
CCA=>CUA
CAC=>UAC
CCU=>UCU
CAC=>UAC
CAU=>UAU
CCC=>UCC
CCA=>CUA
CAC=>UAC
CCU=>UCU
CGC=>UGC
CAU=>UAU
CCC=>UCC
CUC=>UUC
CCU=>UCU
CGC=>UGC
CAU=>UAU
ACA=>AUA
CUC=>UUC
CAU=>UAU
CGG=>UGG
H=>Y
T=>I
P=>L
H=>Y
R=>W
P=>S
H=>Y
P=>L
P=>L
H=>Y
P=>S
H=>Y
H=>Y
P=>S
P=>L
H=>Y
P=>S
R=>C
H=>Y
P=>S
L=>F
P=>S
R=>C
H=>Y
T=>I
L=>F
H=>Y
R=>W
Nelumbo nuciferaMitochondrion21
C-to-U: 21
514110
514278
514290
514317
514350
514399
514411
514556
514560
514572
514707
514717
514800
514845
514900
514906
514974
515007
515073
515076
515116
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
CAC=>UAC
ACA=>AUA
CAU=>UAU
CAU=>UAU
CCA=>CUA
CCA=>CUA
CCU=>UCU
CGG=>UGG
CUU=>UUU
CCU=>UCU
UCU=>UUU
CUC=>CUU
CUC=>UUC
CCG=>CUG
CAU=>UAU
UCU=>UUU
CGG=>UGG
CCG=>UCG
CAC=>UAC
CGC=>UGC
P=>S
H=>Y
U=>I
H=>Y
H=>Y
P=>L
P=>L
P=>S
R=>W
L=>F
P=>S
S=>F
L=>L
L=>F
P=>L
H=>Y
S=>F
R=>W
P=>S
H=>Y
R=>C
Nothoceros aenigmaticusMitochondrion8
C-to-U: 2
U-to-C: 6
170280
170414
177036
177105
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
C-to-U
UAG=>CAG
UGA=>CGA
UAA=>CAA
ACG=>AUG
UAG=>CAG
UGA=>CGA
UAA=>CAA
ACG=>AUG
TERM=>Q
TERM=>R
TERM=>Q
T=>M
TERM=>Q
TERM=>R
TERM=>Q
T=>M
Ophioglossum californicumMitochondrion86
C-to-U: 74
U-to-C: 12
310324
310356
310370
310409
310423
310442
310446
310454
310458
310476
310506
310594
310613
310684
310689
310733
310751
310854
310864
310888
310894
310929
310988
310989
311043
311117
311162
311172
311217
311241
311250
311280
311282
311294
311324
311384
311406
311415
311416
311422
311424
311454
311975
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
AUC=>AUU
UUC=>UUU
UAG=>CAG
UAU=>CAU
CGG=>UGG
CUC=>CUU
UCU=>UUU
CCA=>CUA
UCU=>UUU
UCC=>UUC
UCC=>UUC
UCA=>UUA
UCU=>UUU
UUC=>UUU
CCA=>CUA
UAU=>CAU
CCA=>CUA
CUC=>CUU
CCC=>UCC
CCA=>CUA
UAA=>CAA
UUC=>UUU
UCA=>UUA
UCU=>UUU
UCA=>UUA
CCA=>CUA
UCA=>UUA
CCA=>CUA
CCU=>UCU
CCC=>UCC
CCG=>CUG
UAA=>CAA
UUC=>UUU
CAU=>UAU
UCA=>UUA
UUC=>UUU
UCA=>UUA
CCC=>CCU
CCU=>UCU
UCG=>UUG
CCG=>CUG
UAA=>CAA
UAA=>CAA
ACG=>AUG
GCC=>GCU
CAU=>UAU
ACC=>AUC
UUC=>UUU
CGG=>UGG
CCC=>CCU
UCU=>UUU
UCG=>UUG
UAA=>CAA
UCC=>UUC
ACG=>AUG
GCC=>GCU
CGU=>UGU
ACC=>AUC
GUC=>GUU
CGG=>UGG
CCA=>CUA
UCU=>UUU
UCA=>UUA
UAA=>CAA
UCC=>UUC
NA=>NA
UAG=>CAG
CGU=>UGU
CCA=>CUA
GUC=>GUU
UUC=>UUU
CCA=>CUA
CAU=>UAU
UCA=>UUA
CGC=>UGC
CGC=>UGC
AUC=>AUU
NA=>NA
UAG=>CAG
UAG=>CAG
CCA=>CUA
CGG=>UGG
UUC=>UUU
UCU=>UUU
CAU=>UAU
UCU=>UUU
I=>I
F=>F
TERM=>Q
Y=>H
R=>W
L=>L
S=>F
P=>L
S=>F
S=>F
S=>F
S=>L
S=>F
F=>F
P=>L
Y=>H
P=>L
L=>L
P=>S
P=>L
TERM=>Q
F=>F
S=>L
S=>F
S=>L
P=>L
S=>L
P=>L
P=>S
P=>S
P=>L
TERM=>Q
F=>F
H=>Y
S=>L
F=>F
S=>L
P=>P
P=>S
S=>L
P=>L
TERM=>Q
TERM=>Q
T=>M
A=>A
H=>Y
T=>I
F=>F
R=>W
P=>P
S=>F
S=>L
TERM=>Q
S=>F
T=>M
A=>A
R=>C
T=>I
V=>V
R=>W
P=>L
S=>F
S=>L
TERM=>Q
S=>F
NA=>NA
TERM=>Q
R=>C
P=>L
V=>V
F=>F
P=>L
H=>Y
S=>L
R=>C
R=>C
I=>I
NA=>NA
TERM=>Q
TERM=>Q
P=>L
R=>W
F=>F
S=>F
H=>Y
S=>F
Oryza sativa Japonica GroupMitochondrion19
C-to-U: 19
303918
303923
303944
303961
304060
304134
304189
304234
304317
304327
304362
304462
304474
304478
304623
304717
304744
304756
304864
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>CCU
CCA=>CUA
CUC=>CUU
UCU=>UUU
CGG=>UGG
CAU=>UAU
CCG=>CUG
UCU=>UUU
CUC=>UUC
CCA=>CUA
CCU=>UCU
CAC=>UAC
CCC=>UCC
CAC=>UAC
UUC=>UUU
CAU=>UAU
CAC=>UAC
CAU=>UAU
CUU=>UUU
P=>P
P=>L
L=>L
S=>F
R=>W
H=>Y
P=>L
S=>F
L=>F
P=>L
P=>S
H=>Y
P=>S
H=>Y
F=>F
H=>Y
H=>Y
H=>Y
L=>F
Phaeoceros laevisMitochondrion8
C-to-U: 1
U-to-C: 7
40651
40677
40785
42544
48613
48721
48733
48823
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
ACG=>AUG
UAA=>CAA
UAA=>CAA
UGA=>CGA
UGA=>CGA
UAA=>CAA
UAG=>CAG
UAA=>CAA
T=>M
TERM=>Q
TERM=>Q
TERM=>R
TERM=>R
TERM=>Q
TERM=>Q
TERM=>Q
Phlegmariurus squarrosusMitochondrion1
U-to-C: 1
56216NA+U-to-CNA=>NANA=>NA
Pleurozia purpureaMitochondrion1
C-to-U: 1
98800CDS+C-to-UCAG=>UAGQ=>TERM
Psilotum nudumMitochondrion23
C-to-U: 22
U-to-C: 1
283346
283358
283454
283770
283808
283813
283830
284020
284074
284129
284157
284204
284220
284315
284465
284472
284525
284555
284574
284651
284941
284996
285112
5'UTR
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
3'UTR
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
CUU=>UUU
CUU=>UUU
UCA=>UUA
CGC=>UGC
NA=>NA
UCA=>UUA
CAU=>UAU
CCA=>UCA
CAC=>CAU
CAA=>UAA
NA=>NA
UGC=>UGU
UGA=>CGA
NA=>NA
NA=>NA
CCG=>CUG
CCU=>CUU
UAC=>UAU
CCG=>CUG
CGG=>UGG
UCA=>UUA
NA=>NA
NA=>NA
L=>F
L=>F
S=>L
R=>C
NA=>NA
S=>L
H=>Y
P=>S
H=>H
Q=>TERM
NA=>NA
C=>C
TERM=>R
NA=>NA
NA=>NA
P=>L
P=>L
Y=>Y
P=>L
R=>W
S=>L
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)