rps7 - Plant Editosome Database - BIG Data Center

Summary

Gene: rps7
Function: Ribosomal protein
Species: 62
Editing Factors:8 (DYW2, EMP21, MEF37, ORRM2, ORRM3, ORRM4, OTP90, PGN)
Editing Types:
C-to-U (128)
U-to-C (85)
Editing Events: 231 (C-to-U: 128   U-to-C: 85   NA: 18)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast2
NA: 2
136982-137425
95426-95869
CDS
CDS
+
-
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Alsophila spinulosaChloroplast2
NA: 2
100106-100579
142391-142864
CDS
CDS
-
+
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast2
U-to-C: 2
138322
96203
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Anthoceros angustusChloroplast12
C-to-U: 2
U-to-C: 10
110294
110303
110351
110418
110463
110613
158053
158203
158248
158315
158363
158372
NA
NA
CDS
CDS
NA
NA
CDS
CDS
NA
CDS
NA
CDS
+C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
NA=>NA
NA=>NA
GUU=>GCU
UCU=>CCU
NA=>NA
NA=>NA
UGA=>CGA
UAA=>CAA
NA=>NA
UCA=>UUA
NA=>NA
UUU=>UCU
NA=>NA
NA=>NA
V=>A
S=>P
NA=>NA
NA=>NA
TERM=>R
TERM=>Q
NA=>NA
S=>L
NA=>NA
F=>S
Asclepias syriacaMitochondrion2
NA: 2
986-1432CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium pekinenseChloroplast2
U-to-C: 2
137795
96110
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UCA
NA=>NA
TERM=>S
Asplenium prolongatumChloroplast4
C-to-U: 2
U-to-C: 2
138636
138794
93968
94127
CDS
NA
CDS
NA
+C-to-U
C-to-U
U-to-C
U-to-C
GCG=>GUG
NA=>NA
UAA=>UCA
NA=>NA
A=>V
NA=>NA
TERM=>S
NA=>NA
Athyrium anisopterumChloroplast2
U-to-C: 2
137855
95944
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Athyrium opacumChloroplast2
U-to-C: 2
137608
95716
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Athyrium sheareriChloroplast2
U-to-C: 2
137642
95937
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Athyrium sinenseChloroplast2
U-to-C: 2
137855
95915
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>CAA
NA=>NA
TERM=>Q
Austroblechnum melanocaulonChloroplast1
C-to-U: 1
95283CDS+C-to-UGUG=>UUGV=>L
Beta macrocarpaMitochondrion3
C-to-U: 3
33188
33404
33498
NA
NA
NA
+C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta vulgaris subsp. maritimaMitochondrion3
C-to-U: 3
43567
43783
43877
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UUC=>UUU
CCA=>CUA
UCA=>UUA
F=>F
P=>L
S=>L
Beta vulgaris subsp. vulgarisMitochondrion3
C-to-U: 3
231766
231982
232076
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UCA=>UUA
UUC=>UUU
CCA=>CUA
S=>L
F=>F
P=>L
Brassica napusMitochondrion2
C-to-U: 2
50040CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Christella appendiculataChloroplast2
U-to-C: 2
138091
96087
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Citrullus lanatusMitochondrion2
C-to-U: 2
279570
279786
CDS
CDS
+C-to-U
C-to-U
UCA=>UYA
CCA=>CYA
S=>S/L
P=>P/L
Cucurbita pepoMitochondrion3
C-to-U: 3
785715
785908
785931
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
UAC=>UAY
CCA=>CYA
UCA=>UUA
Y=>Y
P=>P/L
S=>L
Cycas taitungensisMitochondrion2
C-to-U: 2
392502CDS
CDS
+C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
Cyrtomium devexiscapulaeChloroplast4
U-to-C: 4
138335
138359
95779
95803
NA
CDS
NA
CDS
+U-to-C
U-to-C
U-to-C
U-to-C
NA=>NA
UAA=>CAA
NA=>NA
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
TERM=>Q
Cyrtomium falcatumChloroplast2
U-to-C: 2
138453
95929
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Cystopteris chinensisChloroplast2
U-to-C: 2
137838
96062
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UAC
NA=>NA
TERM=>Y
Deparia lanceaChloroplast2
U-to-C: 2
137593
95677
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Deparia pycnosoraChloroplast2
U-to-C: 2
137771
95916
NA
NA
+U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast2
U-to-C: 2
137581
95907
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Diplaziopsis cavalerianaChloroplast2
U-to-C: 2
138398
96485
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Diplaziopsis javanicaChloroplast2
U-to-C: 2
138355
96352
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Diplazium bellumChloroplast2
U-to-C: 2
138031
96055
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UCA
NA=>NA
TERM=>S
Diplazium dilatatumChloroplast2
U-to-C: 2
137715
95811
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Diplazium dushanenseChloroplast2
U-to-C: 2
137238
95355
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Diplazium striatumChloroplast2
U-to-C: 2
137345
95420
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Diplazium unilobumChloroplast1
U-to-C: 1
95920CDS+U-to-CUAA=>UACTERM=>Y
Diplopterygium glaucumChloroplast1
NA: 1
1402-1875NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast2
U-to-C: 2
137606
95846
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Elaeis guineensisChloroplast1
C-to-U: 1
99037CDSNAC-to-UGCC=>GCUA=>A
Homalosorus pycnocarposChloroplast2
U-to-C: 2
138675
96673
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Hymenasplenium unilateraleChloroplast2
U-to-C: 2
138463
96643
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UAC
NA=>NA
TERM=>Y
Hypodematium crenatumChloroplast2
U-to-C: 2
136706
95192
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Lepisorus clathratusChloroplast2
U-to-C: 2
139867
98226
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UCA
NA=>NA
TERM=>S
Lotus japonicusMitochondrion4
C-to-U: 4
342953
343169
NA
NA
NA
NA
+C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Macrothelypteris torresianaChloroplast2
U-to-C: 2
137743
95803
CDS
NA
+U-to-C
U-to-C
UAA=>UAC
NA=>NA
TERM=>Y
NA=>NA
Marsilea crenataChloroplast2
NA: 2
140591-141064
98393-98866
CDS
CDS
-
+
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast2
U-to-C: 2
137676
95293
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Myriopteris lindheimeriChloroplast2
U-to-C: 2
142639
96191
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Nelumbo nuciferaMitochondrion4
C-to-U: 3
NA: 1
144031-144477
144146
144201
144362
CDS
CDS
CDS
CDS
-
+
NA
C-to-U
C-to-U
C-to-U
NA=>NA
UCA=>UUA
CCA=>CUA
CUU=>UUU
NA=>NA
S=>L
P=>L
L=>F
Nothoceros aenigmaticusPlastid2
NA: 2
990-1457NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
U-to-C: 2
135935
94033
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UCA
NA=>NA
TERM=>S
Ophioglossum californicumMitochondrion36
C-to-U: 36
262862
262880
262941
262977
262984
263004
263009
263018
263024
263035
263046
263073
263081
263168
263219
263228
263245
263471
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
3'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
AUC=>AUU
CGU=>UGU
CGU=>UGU
CGU=>UGU
CAC=>UAC
NA=>NA
CCC=>CCU
CCG=>CUG
CAC=>UAC
ACC=>ACU
UGC=>UGU
CGU=>UGU
AUC=>AUU
GUC=>GUU
CAC=>UAC
CAC=>UAC
ACU=>AUU
ACA=>AUA
NA=>NA
ACC=>ACU
UGC=>UGU
NA=>NA
UUC=>UUU
ACU=>AUU
GUC=>GUU
CUC=>CUU
CGU=>UGU
NA=>NA
ACA=>AUA
NA=>NA
CGU=>UGU
CCC=>CCU
CCG=>CUG
CUC=>CUU
UUC=>UUU
NA=>NA
I=>I
R=>C
R=>C
R=>C
H=>Y
NA=>NA
P=>P
P=>L
H=>Y
T=>T
C=>C
R=>C
I=>I
V=>V
H=>Y
H=>Y
T=>I
T=>I
NA=>NA
T=>T
C=>C
NA=>NA
F=>F
T=>I
V=>V
L=>L
R=>C
NA=>NA
T=>I
NA=>NA
R=>C
P=>P
P=>L
L=>L
F=>F
NA=>NA
Oryza sativa Japonica GroupMitochondrion2
C-to-U: 2
46680
46735
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
CUU=>UUU
S=>L
L=>F
Osmundastrum cinnamomeumChloroplast1
NA: 1
1391-1858CDS+NANA=>NANA=>NA
Pseudophegopteris auritaChloroplast2
U-to-C: 2
136757
95224
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Psilotum nudumMitochondrion7
C-to-U: 7
45898
45946
45965
46049
46158
46164
46309
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACA=>AUA
UCC=>UCU
CCG=>CUG
CCU=>UCU
NA=>NA
ACC=>ACU
CUG=>UUG
T=>I
S=>S
P=>L
P=>S
NA=>NA
T=>T
L=>L
Pteridium aquilinum subsp. aquilinumChloroplast2
U-to-C: 2
139124
97574
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Rhachidosorus consimilisChloroplast2
U-to-C: 2
138936
96986
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Rhazya strictaMitochondrion4
C-to-U: 4
184271
184487
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
CCA=>CUA
CCA=>CUA
S=>L
S=>L
P=>L
P=>L
Stegnogramma sagittifoliaChloroplast2
U-to-C: 2
137702
95629
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UAC
NA=>NA
TERM=>Y
Takakia lepidozioidesChloroplast1
NA: 1
1281-1748NA+NANA=>NANA=>NA
Woodsia macrochlaenaChloroplast2
U-to-C: 2
137651
95809
NA
CDS
+U-to-C
U-to-C
NA=>NA
UAA=>UAC
NA=>NA
TERM=>Y
Woodsia polystichoidesChloroplast2
U-to-C: 2
137342
95490
CDS
NA
+U-to-C
U-to-C
UAA=>UCA
NA=>NA
TERM=>S
NA=>NA
Woodwardia unigemmataChloroplast2
U-to-C: 2
139003
97102
CDS
NA
+U-to-C
U-to-C
UAA=>CAA
NA=>NA
TERM=>Q
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)