nad9 - Plant Editosome Database - BIG Data Center

Summary

Gene: nad9
Function: NADH dehydrogenase
Species: 24
Editing Factors:15 (DYW2, EMP21, EMP5, MEF37, MEF57, MEF8, NUWA, ORRM2, ORRM3, ORRM4, OTP90, PGN, SLO1, SLO2, SlORRM4)
Editing Types:
C-to-U (314)
U-to-C (30)
Editing Events: 380 (C-to-U: 314   NA: 36   U-to-C: 30)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Arabidopsis thalianaMitochondrion16
C-to-U: 14
NA: 2
23663-24235
23797
23838
23908
23938
24046
24069
24144
CDS
CDS
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
-
+
NA
NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta macrocarpaMitochondrion5
C-to-U: 5
162609
162630
162816
162845
162885
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCC=>UUC
CCG=>CUG
UCU=>UUU
CGG=>UGG
P=>L
S=>F
P=>L
S=>F
R=>W
Beta vulgaris subsp. maritimaMitochondrion5
C-to-U: 5
162653
162674
162860
162889
162929
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCC=>UUC
CCG=>CUG
CGG=>UGG
CCA=>CUA
S=>F
S=>F
P=>L
R=>W
P=>L
Beta vulgaris subsp. vulgarisMitochondrion5
C-to-U: 5
125
146
332
361
401
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCU=>UUU
CCG=>CUG
CGG=>UGG
UCC=>UUC
P=>L
S=>F
P=>L
R=>W
S=>F
Brassica napusMitochondrion16
C-to-U: 16
27498
27539
27609
27639
27747
27770
27845
27923
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CUU=>UUU
UCA=>UUA
UCA=>UUA
UCG=>UUG
UCG=>UUG
CGG=>UGG
CGG=>UGG
UCC=>UUC
UCC=>UUC
CAU=>UAU
CAU=>UAU
UCU=>UUU
UCU=>UUU
CCG=>UCG
CCG=>UCG
L=>F
L=>F
S=>L
S=>L
S=>L
S=>L
R=>W
R=>W
S=>F
S=>F
H=>Y
H=>Y
S=>F
S=>F
P=>S
P=>S
Citrullus lanatusMitochondrion8
C-to-U: 8
241659
241737
241812
241943
241973
242013
242043
242084
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCG=>UUG
CCG=>UCG
CUU=>UUU
CGG=>UGG
UCC=>UUC
UCC=>UUC
UCG=>UUG
S=>L
S=>L
P=>S
L=>F
R=>W
S=>F
S=>F
S=>L
Cucurbita pepoMitochondrion8
C-to-U: 8
965783
965861
965936
966067
966097
966137
966167
966208
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>YGG
UCC=>UYC
UCG=>UYG
CUU=>YUU
UCA=>UYA
CCG=>YCG
UCC=>UUC
UCG=>UYG
R=>R/W
S=>S/F
S=>S/L
L=>L/F
S=>S/L
P=>P/S
S=>F
S=>S/L
Ginkgo bilobaMitochondrion1
NA: 1
56675-57268CDS-NANA=>NANA=>NA
Lotus japonicusMitochondrion16
C-to-U: 16
256946
256987
257017
257057
257087
257218
257293
257371
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
CUU=>UUU
CUU=>UUU
CCG=>UCG
CCG=>UCG
UCG=>UUG
UCG=>UUG
UCC=>UUC
UCC=>UUC
CGG=>UGG
CGG=>UGG
UCC=>UUC
UCC=>UUC
UCA=>UUA
UCA=>UUA
S=>F
S=>F
L=>F
L=>F
P=>S
P=>S
S=>L
S=>L
S=>F
S=>F
R=>W
R=>W
S=>F
S=>F
S=>L
S=>L
Millettia pinnataMitochondrion32
C-to-U: 32
147824
147865
147895
147935
147965
148096
148171
148249
308746
308787
308817
308857
308887
309018
309093
309171
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGG=>UGG
UCC=>UUC
CGG=>UGG
UCC=>UUC
UCU=>UUU
CUU=>UUU
UCU=>UUU
CUU=>UUU
CGG=>UGG
UCG=>UUG
CGG=>UGG
UCG=>UUG
UCA=>UUA
UCG=>UUG
UCA=>UUA
UCG=>UUG
CCG=>UCG
CUU=>UUU
CCG=>UCG
CUU=>UUU
UCC=>UUC
UCC=>UUC
UCC=>UUC
UCC=>UUC
UCA=>UUA
CCG=>UCG
UCA=>UUA
CCG=>UCG
UCC=>UUC
UCU=>UUU
UCC=>UUC
UCU=>UUU
R=>W
S=>F
R=>W
S=>F
S=>F
L=>F
S=>F
L=>F
R=>W
S=>L
R=>W
S=>L
S=>L
S=>L
S=>L
S=>L
P=>S
L=>F
P=>S
L=>F
S=>F
S=>F
S=>F
S=>F
S=>L
P=>S
S=>L
P=>S
S=>F
S=>F
S=>F
S=>F
Nelumbo nuciferaMitochondrion16
C-to-U: 16
285055
285133
285154
285159
285208
285231
285264
285339
285352
285369
285397
285409
285439
285447
285480
285580
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
UCU=>UUU
CAU=>UAU
UCU=>UUU
UCU=>UUU
CAU=>UAU
CAA=>UAA
UCA=>UUA
CGG=>UGG
CAU=>UAU
CCG=>UCG
UCC=>UUC
CUU=>UUU
UCG=>UUG
UCC=>UUC
P=>L
P=>L
S=>F
H=>Y
S=>F
S=>F
H=>Y
Q=>TERM
S=>L
R=>W
H=>Y
P=>S
S=>F
L=>F
S=>L
S=>F
Nitella hyalinaMitochondrion1
NA: 1
37591-38157CDS-NANA=>NANA=>NA
Nothoceros aenigmaticusMitochondrion10
NA: 6
U-to-C: 4
71993-72117
73097-73352
73121
73214
74130-74324
NA
CDS
NA
CDS
CDS
CDS
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA
NA
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion48
C-to-U: 38
U-to-C: 10
100004
100016
100119
100120
100137
100146
100149
100331
99484
99669
99756
99769
99773
99775
99843
99864
99885
99905
99927
99929
99946
99956
99981
99984
5'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
UGU=>CGU
UAG=>CAG
NA=>NA
UGU=>CGU
UAG=>CAG
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UUC=>UUU
CGC=>UGC
UUC=>UUU
UUC=>UUU
CGC=>UGC
UUC=>UUU
NA=>NA
UCA=>UUA
UGC=>CGC
NA=>NA
UCA=>UUA
UGC=>CGC
ACA=>AUA
UUC=>UUU
UGA=>CGA
ACA=>AUA
UUC=>UUU
UGA=>CGA
ACG=>AUG
ACU=>AUU
UCC=>UUC
ACG=>AUG
ACU=>AUU
UCC=>UUC
UGU=>CGU
CCA=>CUA
UCA=>UUA
UGU=>CGU
CCA=>CUA
UCA=>UUA
CUC=>UUC
CCC=>CCU
UCA=>UUA
CUC=>UUC
CCC=>CCU
UCA=>UUA
NA=>NA
C=>R
TERM=>Q
NA=>NA
C=>R
TERM=>Q
S=>L
S=>L
S=>L
S=>L
S=>L
S=>L
F=>F
R=>C
F=>F
F=>F
R=>C
F=>F
NA=>NA
S=>L
C=>R
NA=>NA
S=>L
C=>R
T=>I
F=>F
TERM=>R
T=>I
F=>F
TERM=>R
T=>M
T=>I
S=>F
T=>M
T=>I
S=>F
C=>R
P=>L
S=>L
C=>R
P=>L
S=>L
L=>F
P=>P
S=>L
L=>F
P=>P
S=>L
Orthotrichum diaphanumMitochondrion2
NA: 2
78123-78354
80377-80732
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Orthotrichum macrocephalumMitochondrion2
NA: 2
78005-78236
80260-80615
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Oryza sativa Japonica GroupMitochondrion12
C-to-U: 12
361796
361884
361905
361959
361982
362015
362090
362103
362120
362148
362160
362190
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCG=>UUG
CCA=>CUA
UCU=>UUU
GAU=>UAU
CGG=>UGG
UCU=>UUU
CCA=>CUA
UCC=>UUC
CCG=>UCG
CAU=>UAU
CAU=>UAU
S=>L
S=>L
P=>L
S=>F
D=>Y
R=>W
S=>F
P=>L
S=>F
P=>S
H=>Y
H=>Y
Phaeoceros laevisMitochondrion5
NA: 3
U-to-C: 2
107981-108105
109055-109310
109079
110093-110287
110230
NA
CDS
CDS
NA
CDS
+
-
U-to-C
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion2
C-to-U: 2
126831
127379
CDS
CDS
+C-to-U
C-to-U
CAA=>UAA
ACG=>AUG
Q=>TERM
T=>M
Psilotum nudumMitochondrion21
C-to-U: 21
305251
305255
305295
305324
305454
305543
305544
305604
305634
305690
305745
305763
305868
305869
305879
305898
305910
305990
306045
306086
306227
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
5'UTR
CDS
3'UTR
5'UTR
CDS
CDS
CDS
CDS
5'UTR
CDS
3'UTR
5'UTR
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>UCG
UUC=>UUU
NA=>NA
CCG=>CUG
UCC=>UUC
UCA=>UUA
UCA=>UUA
NA=>NA
UCC=>UUC
NA=>NA
NA=>NA
CGC=>UGC
CCG=>UCG
UCG=>UUG
CUC=>UUC
NA=>NA
UCA=>UUA
NA=>NA
NA=>NA
UCA=>UUA
UCA=>UUA
P=>S
F=>F
NA=>NA
P=>L
S=>F
S=>L
S=>L
NA=>NA
S=>F
NA=>NA
NA=>NA
R=>C
P=>S
S=>L
L=>F
NA=>NA
S=>L
NA=>NA
NA=>NA
S=>L
S=>L
Syntrichia filarisMitochondrion2
NA: 2
79402-79633
81622-81977
CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Tetraphis pellucidaMitochondrion4
NA: 4
14013-14241
15368-15723
CDS
CDS
CDS
CDS
+NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Welwitschia mirabilisMitochondrion1
NA: 1
574389-575000CDS-NANA=>NANA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)