PPGR - Gene Detail

Gene ID	Pop_A01G002217 View in Genome Browser
Position	chrA01:13651471-13655346 (-) 3875bp
Gene Type	gene
Gene Description (Protein Product)	"Beta-1
Organism	Populus alba x Populus glandulosa
Also AS	Potri.001G343600AT3G27540Potri.001G343600.v4.1

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Pop_A18G018999 Glycosyltransferase family 17 Pop_A06G061650 Beta-1,4-mannosyl-glycoprotein Pop_G18G019201 Beta-1,4-mannosyl-glycoprotein
Regulatory gene	Pop_A01G003924 Zinc finger protein Pop_A01G004012 Myb/SANT-like DNA-binding domain Pop_A01G004096 transcriptional regulator

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0000139	Golgi membrane	CC
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005794	Golgi apparatus	CC
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0031090	organelle membrane	CC
GO:0031984	organelle subcompartment	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098791	Golgi apparatus subcompartment	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00510	N-Glycan biosynthesis	N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].