PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_A01G010358 View in Genome Browser
Position	chrA01:16484723-16486930 (+) 2207bp
Gene Type	gene
Gene Description (Protein Product)	Ceramidase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.001G317400AT4G22330Potri.001G317400.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_A11G056530 Sphingolipid delta(4)-desaturase DES1-like Pop_G05G057449 Neutral ceramidase-like Pop_G05G008448 Belongs to the sterol desaturase family
Regulatory gene	Pop_A01G004012 Myb/SANT-like DNA-binding domain Pop_A01G004240 Trihelix transcription factor Pop_A01G005990 MADS-box transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000139	Golgi membrane	CC
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0005794	Golgi apparatus	CC
GO:0006066	alcohol metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006643	membrane lipid metabolic process	BP
GO:0006665	sphingolipid metabolic process	BP
GO:0006670	sphingosine metabolic process	BP
GO:0006671	phytosphingosine metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008284	positive regulation of cell population proliferation	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016787	hydrolase activity	MF
GO:0016798	hydrolase activity, acting on glycosyl bonds	MF
GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	MF
GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	MF
GO:0017040	N-acylsphingosine amidohydrolase activity	MF
GO:0019751	polyol metabolic process	BP
GO:0030148	sphingolipid biosynthetic process	BP
GO:0030173	obsolete integral component of Golgi membrane	CC
GO:0030176	obsolete integral component of endoplasmic reticulum membrane	CC
GO:0031090	organelle membrane	CC
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031227	obsolete intrinsic component of endoplasmic reticulum membrane	CC
GO:0031228	obsolete intrinsic component of Golgi membrane	CC
GO:0031300	obsolete intrinsic component of organelle membrane	CC
GO:0031301	obsolete integral component of organelle membrane	CC
GO:0031984	organelle subcompartment	CC
GO:0034311	diol metabolic process	BP
GO:0034312	diol biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046165	alcohol biosynthetic process	BP
GO:0046173	polyol biosynthetic process	BP
GO:0046467	membrane lipid biosynthetic process	BP
GO:0046512	sphingosine biosynthetic process	BP
GO:0046519	sphingoid metabolic process	BP
GO:0046520	sphingoid biosynthetic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0065007	biological regulation	BP
GO:0070774	phytoceramidase activity	MF
GO:0071602	phytosphingosine biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0097164	ammonium ion metabolic process	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098791	Golgi apparatus subcompartment	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00600	Sphingolipid metabolism	-