PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_A01G029533 View in Genome Browser
Position	chrA01:48240154-48246551 (+) 6397bp
Gene Type	gene
Gene Description (Protein Product)	DNA (cytosine-5)-methyltransferase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.001G009600AT1G69770Potri.001G009600.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G03G078189 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family Pop_A03G050300 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family Pop_G04G083874 Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Regulatory gene	Pop_A01G005990 MADS-box transcription factor Pop_A01G056931 Dof zinc finger protein Pop_A01G059879 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000278	mitotic cell cycle	BP
GO:0000281	mitotic cytokinesis	BP
GO:0000910	cytokinesis	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003886	DNA (cytosine-5-)-methyltransferase activity	MF
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006304	DNA modification	BP
GO:0006305	DNA alkylation	BP
GO:0006306	DNA methylation	BP
GO:0006325	chromatin organization	BP
GO:0006342	heterochromatin formation	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006464	protein modification process	BP
GO:0006479	protein methylation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008168	methyltransferase activity	MF
GO:0008213	protein alkylation	BP
GO:0008356	asymmetric cell division	BP
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	MF
GO:0009008	DNA-methyltransferase activity	MF
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010069	zygote asymmetric cytokinesis in embryo sac	BP
GO:0010070	zygote asymmetric cell division	BP
GO:0010154	fruit development	BP
GO:0010425	DNA methylation on cytosine within a CNG sequence	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016043	cellular component organization	BP
GO:0016458	obsolete gene silencing	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016571	histone methylation	BP
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0018022	peptidyl-lysine methylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018205	peptidyl-lysine modification	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0032259	methylation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032776	DNA methylation on cytosine	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034968	histone lysine methylation	BP
GO:0036211	protein modification process	BP
GO:0040029	epigenetic regulation of gene expression	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0045814	negative regulation of gene expression, epigenetic	BP
GO:0045892	negative regulation of DNA-templated transcription	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048316	seed development	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051301	cell division	BP
GO:0051567	histone H3-K9 methylation	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0061640	cytoskeleton-dependent cytokinesis	BP
GO:0061647	histone H3-K9 modification	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090116	C-5 methylation of cytosine	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0140097	catalytic activity, acting on DNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1902679	negative regulation of RNA biosynthetic process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903507	negative regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].