PPGR - Gene Detail

Basic Information

Gene ID	Pop_A02G012233 View in Genome Browser
Position	chrA02:11005562-11007052 (+) 1490bp
Gene Type	gene
Gene Description (Protein Product)	"Zinc-binding domain present in Lin-11
Organism	Populus alba x Populus glandulosa
Also AS	Potri.002G157300AT1G01780Potri.002G157300.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_A12G081566 ubiquitin-60S ribosomal protein

Pop_G11G070390 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation

Pop_G05G032902 cellular macromolecule catabolic process

Regulatory gene

Pop_A01G004140 Heat shock factor protein

Pop_A01G010139 Heat Stress Transcription Factor

Pop_A01G025061 B3 DNA binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003779	actin binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007015	actin filament organization	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0022607	cellular component assembly	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044877	protein-containing complex binding	MF
GO:0051015	actin filament binding	MF
GO:0051017	actin filament bundle assembly	BP
GO:0061572	actin filament bundle organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097435	supramolecular fiber organization	BP