PPGR - Gene Detail

Basic Information

Gene ID	Pop_A04G029252 View in Genome Browser
Position	chrA04:13625201-13627061 (+) 1860bp
Gene Type	gene
Gene Description (Protein Product)	"butyrate--CoA ligase AAE11
Organism	Populus alba x Populus glandulosa
Also AS	Potri.004G082000AT1G65880Potri.004G082000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_A12G081566 ubiquitin-60S ribosomal protein

Pop_G11G070390 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation

Pop_G05G032902 cellular macromolecule catabolic process

Regulatory gene

Pop_A01G004107 transcription factor

Pop_A01G004121 Transcription factor

Pop_A01G005965 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005777	peroxisome	CC
GO:0006082	organic acid metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006631	fatty acid metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016143	S-glycoside metabolic process	BP
GO:0016144	S-glycoside biosynthetic process	BP
GO:0016405	CoA-ligase activity	MF
GO:0016874	ligase activity	MF
GO:0016877	ligase activity, forming carbon-sulfur bonds	MF
GO:0016878	acid-thiol ligase activity	MF
GO:0018858	benzoate-CoA ligase activity	MF
GO:0019605	butyrate metabolic process	BP
GO:0019748	secondary metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0019757	glycosinolate metabolic process	BP
GO:0019758	glycosinolate biosynthetic process	BP
GO:0019760	glucosinolate metabolic process	BP
GO:0019761	glucosinolate biosynthetic process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0042579	microbody	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0046459	short-chain fatty acid metabolic process	BP
GO:0047760	butyrate-CoA ligase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901657	glycosyl compound metabolic process	BP
GO:1901659	glycosyl compound biosynthetic process	BP