PPGR - Gene Detail

Basic Information

Gene ID	Pop_A05G056016 View in Genome Browser
Position	chrA05:7146021-7158503 (-) 12482bp
Gene Type	gene
Gene Description (Protein Product)	Acetyl-CoA Carboxylase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.005G169100AT1G36160Potri.005G169100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_A19G052863 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA

Pop_G19G007579 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA

Pop_G05G074053 Belongs to the alpha-IPM synthase homocitrate synthase family

Regulatory gene

Pop_A01G003924 Zinc finger protein

Pop_A01G004096 transcriptional regulator

Pop_A01G004199 GAGA binding protein-like family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003989	acetyl-CoA carboxylase activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006082	organic acid metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006631	fatty acid metabolic process	BP
GO:0006633	fatty acid biosynthetic process	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009735	response to cytokinin	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009888	tissue development	BP
GO:0009933	meristem structural organization	BP
GO:0009987	cellular process	BP
GO:0010014	meristem initiation	BP
GO:0010016	shoot system morphogenesis	BP
GO:0010033	response to organic substance	BP
GO:0010072	primary shoot apical meristem specification	BP
GO:0010154	fruit development	BP
GO:0016020	membrane	CC
GO:0016053	organic acid biosynthetic process	BP
GO:0016421	CoA carboxylase activity	MF
GO:0016874	ligase activity	MF
GO:0016885	ligase activity, forming carbon-carbon bonds	MF
GO:0019752	carboxylic acid metabolic process	BP
GO:0022414	reproductive process	BP
GO:0022622	root system development	BP
GO:0030497	fatty acid elongation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0042221	response to chemical	BP
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0048316	seed development	BP
GO:0048364	root development	BP
GO:0048367	shoot system development	BP
GO:0048507	meristem development	BP
GO:0048508	embryonic meristem development	BP
GO:0048532	anatomical structure arrangement	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0050896	response to stimulus	BP
GO:0061458	reproductive system development	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0072330	monocarboxylic acid biosynthetic process	BP
GO:0090421	embryonic meristem initiation	BP
GO:0099402	plant organ development	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00640	Propanoate metabolism	-
map00620	Pyruvate metabolism	-
map00061	Fatty acid biosynthesis	-