Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_A05G073185
View in Genome Browser
Position
chrA05:13271021-13274434 (+)
3413bp
Gene Type
gene
Gene Description (Protein Product)
3-dehydroquinate synthase
Organism
Populus alba x Populus glandulosa
Also AS Potri.005G110900AT5G66120Potri.005G110900.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G01G004770
Pop_G01G004771 Phospho-2-dehydro-3-deoxyheptonate aldolase
Pop_A10G001299 Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase
Regulatory gene
Pop_A01G003796 isoform X1
Pop_A01G003952 transcription factor
Pop_A01G003996 GATA transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003856 3-dehydroquinate synthase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0006082 organic acid metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009570 chloroplast stroma CC
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0016053 organic acid biosynthetic process BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016838 carbon-oxygen lyase activity, acting on phosphates MF
GO:0019632 shikimate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032787 monocarboxylic acid metabolic process BP
GO:0033587 chorismate biosynthetic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046394 carboxylic acid biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:0072330 monocarboxylic acid biosynthetic process BP
GO:0097708 intracellular vesicle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:1901576 organic substance biosynthetic process BP
GO:1901615 organic hydroxy compound metabolic process BP
GO:1901617 organic hydroxy compound biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00400 Phenylalanine, tyrosine and tryptophan biosynthesis -