PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_A10G069219 View in Genome Browser
Position	chrA10:6824853-6832031 (-) 7178bp
Gene Type	gene
Gene Description (Protein Product)	Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Organism	Populus alba x Populus glandulosa
Also AS	Potri.010G145900AT2G18790Potri.010G145900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_A13G054027 transcription factor Pop_A14G045039 transcription factor Pop_G14G050907 transcription factor
Regulatory gene	Pop_A01G056931 Dof zinc finger protein Pop_A01G059879 Dof zinc finger protein Pop_A02G012400 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003682	chromatin binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006066	alcohol metabolic process	BP
GO:0006082	organic acid metabolic process	BP
GO:0006325	chromatin organization	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006464	protein modification process	BP
GO:0006629	lipid metabolic process	BP
GO:0006714	sesquiterpenoid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0006721	terpenoid metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006833	water transport	BP
GO:0006873	intracellular monoatomic ion homeostasis	BP
GO:0006874	intracellular calcium ion homeostasis	BP
GO:0006875	obsolete intracellular metal ion homeostasis	BP
GO:0006950	response to stress	BP
GO:0006996	organelle organization	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007602	phototransduction	BP
GO:0007623	circadian rhythm	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009314	response to radiation	BP
GO:0009409	response to cold	BP
GO:0009416	response to light stimulus	BP
GO:0009581	detection of external stimulus	BP
GO:0009582	detection of abiotic stimulus	BP
GO:0009583	detection of light stimulus	BP
GO:0009585	red, far-red light phototransduction	BP
GO:0009605	response to external stimulus	BP
GO:0009606	tropism	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009629	response to gravity	BP
GO:0009630	gravitropism	BP
GO:0009637	response to blue light	BP
GO:0009638	phototropism	BP
GO:0009639	response to red or far red light	BP
GO:0009640	photomorphogenesis	BP
GO:0009642	response to light intensity	BP
GO:0009645	response to low light intensity stimulus	BP
GO:0009649	entrainment of circadian clock	BP
GO:0009687	abscisic acid metabolic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009753	response to jasmonic acid	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009791	post-embryonic development	BP
GO:0009867	jasmonic acid mediated signaling pathway	BP
GO:0009881	photoreceptor activity	MF
GO:0009883	red or far-red light photoreceptor activity	MF
GO:0009888	tissue development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010017	red or far-red light signaling pathway	BP
GO:0010018	far-red light signaling pathway	BP
GO:0010029	regulation of seed germination	BP
GO:0010033	response to organic substance	BP
GO:0010114	response to red light	BP
GO:0010148	transpiration	BP
GO:0010161	red light signaling pathway	BP
GO:0010202	response to low fluence red light stimulus	BP
GO:0010218	response to far red light	BP
GO:0010244	response to low fluence blue light stimulus by blue low-fluence system	BP
GO:0010374	stomatal complex development	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010617	circadian regulation of calcium ion oscillation	BP
GO:0010629	negative regulation of gene expression	BP
GO:0015979	photosynthesis	BP
GO:0016043	cellular component organization	BP
GO:0016604	nuclear body	CC
GO:0017006	protein-tetrapyrrole linkage	BP
GO:0017007	protein-bilin linkage	BP
GO:0017012	protein-phytochromobilin linkage	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019725	cellular homeostasis	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0023052	signaling	BP
GO:0030003	intracellular monoatomic cation homeostasis	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031347	regulation of defense response	BP
GO:0031516	far-red light photoreceptor activity	MF
GO:0031517	red light photoreceptor activity	MF
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0036211	protein modification process	BP
GO:0038023	signaling receptor activity	MF
GO:0042044	fluid transport	BP
GO:0042221	response to chemical	BP
GO:0042592	homeostatic process	BP
GO:0042752	regulation of circadian rhythm	BP
GO:0042802	identical protein binding	MF
GO:0042803	protein homodimerization activity	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043288	apocarotenoid metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043436	oxoacid metabolic process	BP
GO:0043565	sequence-specific DNA binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0045892	negative regulation of DNA-templated transcription	BP
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0046983	protein dimerization activity	MF
GO:0048511	rhythmic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048856	anatomical structure development	BP
GO:0048878	chemical homeostasis	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050801	monoatomic ion homeostasis	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051480	regulation of cytosolic calcium ion concentration	BP
GO:0051606	detection of stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0055065	obsolete metal ion homeostasis	BP
GO:0055074	calcium ion homeostasis	BP
GO:0055080	monoatomic cation homeostasis	BP
GO:0055082	intracellular chemical homeostasis	BP
GO:0060089	molecular transducer activity	MF
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070887	cellular response to chemical stimulus	BP
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071229	cellular response to acid chemical	BP
GO:0071310	cellular response to organic substance	BP
GO:0071395	cellular response to jasmonic acid stimulus	BP
GO:0071478	cellular response to radiation	BP
GO:0071482	cellular response to light stimulus	BP
GO:0071489	cellular response to red or far red light	BP
GO:0071490	cellular response to far red light	BP
GO:0071491	cellular response to red light	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072503	obsolete cellular divalent inorganic cation homeostasis	BP
GO:0072507	obsolete divalent inorganic cation homeostasis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0090558	plant epidermis development	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098771	inorganic ion homeostasis	BP
GO:0104004	cellular response to environmental stimulus	BP
GO:1900140	regulation of seedling development	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1902644	tertiary alcohol metabolic process	BP
GO:1902679	negative regulation of RNA biosynthetic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903507	negative regulation of nucleic acid-templated transcription	BP
GO:1990841	promoter-specific chromatin binding	MF
GO:2000026	regulation of multicellular organismal development	BP
GO:2000028	regulation of photoperiodism, flowering	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP
GO:2000241	regulation of reproductive process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-