Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_A11G032600
View in Genome Browser
Position
chrA11:584309-590084 (-)
5775bp
Gene Type
gene
Gene Description (Protein Product)
2-succinylbenzoate--CoA ligase
Organism
Populus alba x Populus glandulosa
Also AS Potri.011G164100AT1G30520Potri.011G164100.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G01G090348 Belongs to the enoyl-CoA hydratase isomerase family
Pop_G10G048141 Protein PHYLLO, chloroplastic-like
Pop_G08G058374 Protein PHYLLO, chloroplastic-like
Regulatory gene
Pop_A01G003924 Zinc finger protein
Pop_A01G003996 GATA transcription factor
Pop_A01G004096 transcriptional regulator

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005777 peroxisome CC
GO:0005778 peroxisomal membrane CC
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006766 vitamin metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009110 vitamin biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009526 plastid envelope CC
GO:0009536 plastid CC
GO:0009941 chloroplast envelope CC
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0031090 organelle membrane CC
GO:0031903 microbody membrane CC
GO:0031967 organelle envelope CC
GO:0031969 chloroplast membrane CC
GO:0031975 envelope CC
GO:0042170 plastid membrane CC
GO:0042180 cellular ketone metabolic process BP
GO:0042181 ketone biosynthetic process BP
GO:0042372 phylloquinone biosynthetic process BP
GO:0042374 phylloquinone metabolic process BP
GO:0042579 microbody CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044438 obsolete microbody part CC
GO:0044439 obsolete peroxisomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:1901576 organic substance biosynthetic process BP
GO:1901661 quinone metabolic process BP
GO:1901663 quinone biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00130 Ubiquinone and other terpenoid-quinone biosynthesis Ubiquinone (UQ), also called coenzyme Q, and plastoquinone (PQ) are electron carriers in oxidative phosphorylation and photosynthesis, respectively. The quinoid nucleus of ubiquinone is derived from the shikimate pathway; 4-hydroxybenzoate is directly formed from chorismate in bacteria, while it can be formed from either chorismate or tyrosine in yeast. The following biosynthesis of terpenoid moiety involves reactions of prenylation, decarboxylation, and three hydroxylations alternating with three methylations. The order of these reactions are somewhat different between bacteria and yeast. Phylloquinone (vitamin K1), menaquinone (vitamin K2), and tocopherol (vitamin E) are fat-soluble vitamins. Phylloquinone is a compound present in all photosynthetic plants serving as a cofactor for photosystem I-mediated electron transport. Menaquinone is an obligatory component of the electron-transfer pathway in bacteria.