PPGR - Gene Detail

Gene ID	Pop_A11G079001 View in Genome Browser
Position	chrA11:1993899-1996633 (-) 2734bp
Gene Type	gene
Gene Description (Protein Product)	(-)-germacrene D synthase-like
Organism	Populus alba x Populus glandulosa
Also AS	Potri.011G142800AT5G23960Potri.011G142800.v4.1

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Pop_G04G028236 Squalene synthase-like Pop_G09G077339 Squalene synthase-like Pop_G05G018020 Belongs to the UPP synthase family
Regulatory gene	Pop_A01G003924 Zinc finger protein Pop_A01G003954 Homeobox-leucine zipper protein Pop_A01G004096 transcriptional regulator

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0006629	lipid metabolic process	BP
GO:0006644	phospholipid metabolic process	BP
GO:0006720	isoprenoid metabolic process	BP
GO:0006721	terpenoid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008299	isoprenoid biosynthetic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010333	terpene synthase activity	MF
GO:0010334	sesquiterpene synthase activity	MF
GO:0016829	lyase activity	MF
GO:0016835	carbon-oxygen lyase activity	MF
GO:0016838	carbon-oxygen lyase activity, acting on phosphates	MF
GO:0019637	organophosphate metabolic process	BP
GO:0042214	terpene metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0045338	farnesyl diphosphate metabolic process	BP
GO:0046246	terpene biosynthetic process	BP
GO:0051761	sesquiterpene metabolic process	BP
GO:0051762	sesquiterpene biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map00909	Sesquiterpenoid biosynthesis	Sesquiterpenoids (C15 terpenoids) are a group of terpenoids consisting of three isoprene units. They are derive from farnesyl diphosphate (FPP) and can be cyclized to produce various skeletal structures. Sesquiterpenoid biosynthesis begins with the loss of diphosphate from FPP under the action of sesquiterpene synthesis enzymes, generating an allylic cation that is highly susceptible to intramolecular attacks. Cyclization of the farnesyl cation may take place onto either of the remaining double bonds with the result that 6-, 10-, or 11-membered rings may be formed. Many sesquiterpenoids have been isolated from plants, fungi, marine organisms, and Streptomyces species. This map shows a few examples of acyclic and cyclic sesquiterpenoids.