Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_A13G010009
View in Genome Browser
Position
chrA13:7566191-7569495 (-)
3304bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the 3-beta-HSD family
Organism
Populus alba x Populus glandulosa
Also AS Potri.013G079500AT2G23910Potri.013G079500.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G05G057405 4-coumarate--CoA ligase-like
Pop_G01G067538 caffeoyl-CoA O-methyltransferase
Pop_G09G077322 caffeoyl-CoA O-methyltransferase
Regulatory gene
Pop_A01G002215 NAC domain-containing protein
Pop_A01G004084 NAC domain-containing protein
Pop_A01G004576 NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009718 anthocyanin-containing compound biosynthetic process BP
GO:0009812 flavonoid metabolic process BP
GO:0009813 flavonoid biosynthetic process BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016491 oxidoreductase activity MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0019898 extrinsic component of membrane CC
GO:0031090 organelle membrane CC
GO:0031312 extrinsic component of organelle membrane CC
GO:0031984 organelle subcompartment CC
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042406 extrinsic component of endoplasmic reticulum membrane CC
GO:0042440 pigment metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045552 dihydrokaempferol 4-reductase activity MF
GO:0046148 pigment biosynthetic process BP
GO:0046283 anthocyanin-containing compound metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0098827 endoplasmic reticulum subcompartment CC
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00940 Phenylpropanoid biosynthesis Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.