Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_A13G054423
View in Genome Browser
Position
chrA13:13503752-13509696 (+)
5944bp
Gene Type
gene
Gene Description (Protein Product)
phospholipase D
Organism
Populus alba x Populus glandulosa
Also AS Potri.013G012300AT3G05630Potri.013G012300.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G12G068443 Diacylglycerol kinase
Pop_G04G023215 May be involved in the synthesis of minor phospholipids and in modulation of IP3-mediated signal transduction
Pop_G01G075394 Catalyzes the second two steps of the methylation pathway of phosphatidylcholine biosynthesis, the SAM-dependent methylation of phosphatidylmonomethylethanolamine (PMME) to phosphatidyldimethylethanolamine (PDME) and of PDME to phosphatidylcholine (PC)
Regulatory gene
Pop_A01G004559 Plant zinc cluster domain
Pop_A01G025061 B3 DNA binding domain
Pop_A01G032208 WRKY transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004620 phospholipase activity MF
GO:0004630 phospholipase D activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0006629 lipid metabolic process BP
GO:0006643 membrane lipid metabolic process BP
GO:0006644 phospholipid metabolic process BP
GO:0006664 glycolipid metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006950 response to stress BP
GO:0006995 cellular response to nitrogen starvation BP
GO:0007154 cell communication BP
GO:0007275 multicellular organism development BP
GO:0008081 phosphoric diester hydrolase activity MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008610 lipid biosynthetic process BP
GO:0009056 catabolic process BP
GO:0009058 biosynthetic process BP
GO:0009247 glycolipid biosynthetic process BP
GO:0009267 cellular response to starvation BP
GO:0009395 phospholipid catabolic process BP
GO:0009605 response to external stimulus BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010033 response to organic substance BP
GO:0016036 cellular response to phosphate starvation BP
GO:0016042 lipid catabolic process BP
GO:0016298 lipase activity MF
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0019374 galactolipid metabolic process BP
GO:0019375 galactolipid biosynthetic process BP
GO:0019637 organophosphate metabolic process BP
GO:0022622 root system development BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032879 regulation of localization BP
GO:0033554 cellular response to stress BP
GO:0042221 response to chemical BP
GO:0042578 phosphoric ester hydrolase activity MF
GO:0042594 response to starvation BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043562 cellular response to nitrogen levels BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044242 cellular lipid catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046434 organophosphate catabolic process BP
GO:0046467 membrane lipid biosynthetic process BP
GO:0048364 root development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051049 regulation of transport BP
GO:0051716 cellular response to stimulus BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0065007 biological regulation BP
GO:0071496 cellular response to external stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0099402 plant organ development BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901575 organic substance catabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1903509 liposaccharide metabolic process BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00565 Ether lipid metabolism -
map00564 Glycerophospholipid metabolism -