PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_A14G000827 View in Genome Browser
Position	chrA14:9437495-9447731 (-) 10236bp
Gene Type	gene
Gene Description (Protein Product)	single-stranded DNA binding
Organism	Populus alba x Populus glandulosa
Also AS	Potri.014G135700AT4G03090Potri.014G135700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G01G067556 Integrator complex subunit Pop_G01G067545 Integrator complex subunit Pop_G04G010702 Integrator complex subunit
Regulatory gene	Pop_A01G003801 transcription factor Pop_A01G003954 Homeobox-leucine zipper protein Pop_A01G004012 Myb/SANT-like DNA-binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000228	nuclear chromosome	CC
GO:0000278	mitotic cell cycle	BP
GO:0000724	double-strand break repair via homologous recombination	BP
GO:0000725	recombinational repair	BP
GO:0000781	chromosome, telomeric region	CC
GO:0000784	chromosome, telomeric region	CC
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003697	single-stranded DNA binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005694	chromosome	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006302	double-strand break repair	BP
GO:0006310	DNA recombination	BP
GO:0006351	DNA-templated transcription	BP
GO:0006366	transcription by RNA polymerase II	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0007049	cell cycle	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009301	snRNA transcription	BP
GO:0009314	response to radiation	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010212	response to ionizing radiation	BP
GO:0010467	gene expression	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010638	positive regulation of organelle organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016073	snRNA metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019899	enzyme binding	MF
GO:0022402	cell cycle process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032204	regulation of telomere maintenance	BP
GO:0032206	positive regulation of telomere maintenance	BP
GO:0032774	RNA biosynthetic process	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033365	protein localization to organelle	BP
GO:0033554	cellular response to stress	BP
GO:0034502	protein localization to chromosome	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042162	telomeric DNA binding	MF
GO:0042795	snRNA transcription by RNA polymerase II	BP
GO:0043047	single-stranded telomeric DNA binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043565	sequence-specific DNA binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044454	obsolete nuclear chromosome part	CC
GO:0044464	obsolete cell part	CC
GO:0045184	establishment of protein localization	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051054	positive regulation of DNA metabolic process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051130	positive regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070182	DNA polymerase binding	MF
GO:0070198	protein localization to chromosome, telomeric region	BP
GO:0070199	establishment of protein localization to chromosome	BP
GO:0070200	establishment of protein localization to telomere	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070876	SOSS complex	CC
GO:0071704	organic substance metabolic process	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097659	nucleic acid-templated transcription	BP
GO:0098505	G-rich strand telomeric DNA binding	MF
GO:0098687	chromosomal region	CC
GO:0098781	ncRNA transcription	BP
GO:0098847	sequence-specific single stranded DNA binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1904353	regulation of telomere capping	BP
GO:1904355	positive regulation of telomere capping	BP
GO:2001252	positive regulation of chromosome organization	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.