PPGR - Gene Detail

Basic Information

Gene ID	Pop_A14G045043 View in Genome Browser
Position	chrA14:11128009-11128902 (-) 893bp
Gene Type	gene
Gene Description (Protein Product)	Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Organism	Populus alba x Populus glandulosa
Also AS	Potri.014G111700AT3G62100Potri.014G111700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G04G018344 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Pop_G03G083740 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Pop_G04G059374 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Regulatory gene

Pop_A01G003796 isoform X1

Pop_A01G003802 AP2-like ethylene-responsive transcription factor

Pop_A01G003952 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003002	regionalization	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0007275	multicellular organism development	BP
GO:0007389	pattern specification process	BP
GO:0008150	biological_process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009605	response to external stimulus	BP
GO:0009606	tropism	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009629	response to gravity	BP
GO:0009630	gravitropism	BP
GO:0009642	response to light intensity	BP
GO:0009646	response to absence of light	BP
GO:0009647	skotomorphogenesis	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009965	leaf morphogenesis	BP
GO:0010016	shoot system morphogenesis	BP
GO:0010033	response to organic substance	BP
GO:0010051	xylem and phloem pattern formation	BP
GO:0010154	fruit development	BP
GO:0010262	somatic embryogenesis	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010588	cotyledon vascular tissue pattern formation	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0022414	reproductive process	BP
GO:0022622	root system development	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0048316	seed development	BP
GO:0048364	root development	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048598	embryonic morphogenesis	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048825	cotyledon development	BP
GO:0048826	cotyledon morphogenesis	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0099402	plant organ development	BP
GO:0140110	transcription regulator activity	MF
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1905392	plant organ morphogenesis	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-