PPGR - Gene Detail

Gene ID	Pop_G01G013370 View in Genome Browser
Position	chrG01:6525372-6528682 (+) 3310bp
Gene Type	gene
Gene Description (Protein Product)	Mpv17 / PMP22 family
Organism	Populus alba x Populus glandulosa
Also AS	Potri.001G404600AT1G52870Potri.001G404600.v4.1

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	Pop_G14G044092 Belongs to the peroxisomal membrane protein PXMP2 4 family Pop_G18G083260 Belongs to the peroxisomal membrane protein PXMP2 4 family Pop_G18G078554 Belongs to the peroxisomal membrane protein PXMP2 4 family
Regulatory gene	Pop_A01G003954 Homeobox-leucine zipper protein Pop_A01G004152 Homeobox-leucine zipper protein Pop_A01G015498 Homeobox-leucine zipper protein

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005777	peroxisome	CC
GO:0005778	peroxisomal membrane	CC
GO:0005779	obsolete integral component of peroxisomal membrane	CC
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0031090	organelle membrane	CC
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031231	obsolete intrinsic component of peroxisomal membrane	CC
GO:0031300	obsolete intrinsic component of organelle membrane	CC
GO:0031301	obsolete integral component of organelle membrane	CC
GO:0031903	microbody membrane	CC
GO:0042579	microbody	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044438	obsolete microbody part	CC
GO:0044439	obsolete peroxisomal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC

KEGG Term	Name	Description
map04146	Peroxisome	Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.