Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G01G020738
View in Genome Browser
Position
chrG01:24528926-24531181 (-)
2255bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin fusion degradation protein 1 homolog
Organism
Populus alba x Populus glandulosa
Also AS Potri.001G242200AT2G29070Potri.001G242200.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G02G080530 NPL4-like protein
Pop_G14G045135 NPL4-like protein
Pop_G09G077583 Ubiquitin fusion degradation protein 1 homolog
Regulatory gene
Pop_A01G003804 Growth-regulating factor
Pop_A01G004199 GAGA binding protein-like family
Pop_A01G004214 Growth-regulating factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001817 regulation of cytokine production BP
GO:0001818 negative regulation of cytokine production BP
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0002697 regulation of immune effector process BP
GO:0002698 negative regulation of immune effector process BP
GO:0002831 regulation of response to biotic stimulus BP
GO:0002832 negative regulation of response to biotic stimulus BP
GO:0003674 molecular_function MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030163 protein catabolic process BP
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0031984 organelle subcompartment CC
GO:0032101 regulation of response to external stimulus BP
GO:0032102 negative regulation of response to external stimulus BP
GO:0032479 regulation of type I interferon production BP
GO:0032480 negative regulation of type I interferon production BP
GO:0032991 protein-containing complex CC
GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex CC
GO:0036501 UFD1-NPL4 complex CC
GO:0039531 regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway BP
GO:0039532 negative regulation of viral-induced cytoplasmic pattern recognition receptor signaling pathway BP
GO:0039535 regulation of RIG-I signaling pathway BP
GO:0039536 negative regulation of RIG-I signaling pathway BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043901 obsolete negative regulation of multi-organism process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045088 regulation of innate immune response BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050687 negative regulation of defense response to virus BP
GO:0050688 regulation of defense response to virus BP
GO:0050776 regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051117 ATPase binding MF
GO:0051239 regulation of multicellular organismal process BP
GO:0051241 negative regulation of multicellular organismal process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0098796 membrane protein complex CC
GO:0098827 endoplasmic reticulum subcompartment CC
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.