Basic Information
Gene ID
Pop_G01G089218
Position
chrG01:37564463-37564762 (-)
299bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Organism
Also AS Potri.002G122700AT3G19480Potri.002G122700.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G09G077369 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Pop_G08G007359 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Pop_G10G006260 Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Regulatory gene
Pop_A01G003858 ethylene-responsive transcription factor
Pop_A01G003933 DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Pop_A01G003963 ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
map00260 Glycine, serine and threonine metabolism Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].