Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G02G005609
View in Genome Browser
Position
chrG02:13862980-13865751 (+)
2771bp
Gene Type
gene
Gene Description (Protein Product)
repressing transcription factor binding
Organism
Populus alba x Populus glandulosa
Also AS Potri.002G118600AT5G58610Potri.002G118600.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G03G078288 DUF1087
Pop_G03G011222 DUF1087
Pop_G10G001617 TPL-binding domain in jasmonate signalling
Regulatory gene
Pop_A01G002215 NAC domain-containing protein
Pop_A01G004084 NAC domain-containing protein
Pop_A01G004576 NAC domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000118 histone deacetylase complex CC
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001103 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003678 DNA helicase activity MF
GO:0003824 catalytic activity MF
GO:0004003 DNA helicase activity MF
GO:0004386 helicase activity MF
GO:0004407 histone deacetylase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005813 centrosome CC
GO:0005815 microtubule organizing center CC
GO:0005856 cytoskeleton CC
GO:0006325 chromatin organization BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0008026 helicase activity MF
GO:0008094 ATP-dependent activity, acting on DNA MF
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016462 pyrophosphatase activity MF
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016575 histone deacetylation BP
GO:0016581 NuRD complex CC
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017053 transcription repressor complex CC
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019213 deacetylase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032392 DNA geometric change BP
GO:0032508 DNA duplex unwinding BP
GO:0032991 protein-containing complex CC
GO:0033558 protein lysine deacetylase activity MF
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0042623 ATP hydrolysis activity MF
GO:0042826 histone deacetylase binding MF
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070491 DNA-binding transcription factor binding MF
GO:0070603 SWI/SNF superfamily-type complex CC
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090545 CHD-type complex CC
GO:0090568 transcription repressor complex CC
GO:0097159 organic cyclic compound binding MF
GO:0098732 macromolecule deacylation BP
GO:0140096 catalytic activity, acting on a protein MF
GO:0140097 catalytic activity, acting on DNA MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1904949 ATPase complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP