Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G02G005689
View in Genome Browser
Position
chrG02:14388893-14391666 (+)
2773bp
Gene Type
gene
Gene Description (Protein Product)
Double-stranded RNA-binding protein
Organism
Populus alba x Populus glandulosa
Also AS Potri.002G111400AT1G09700Potri.002G111400.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G10G048493 Belongs to the helicase family. Dicer subfamily
Pop_G08G063534 Belongs to the helicase family. Dicer subfamily
Pop_G02G024248 Belongs to the helicase family. Dicer subfamily
Regulatory gene
Pop_A01G002215 NAC domain-containing protein
Pop_A01G003796 isoform X1
Pop_A01G003924 Zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0001101 response to acid chemical BP
GO:0003002 regionalization BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003725 double-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0004518 nuclease activity MF
GO:0004519 endonuclease activity MF
GO:0004521 RNA endonuclease activity MF
GO:0004525 ribonuclease III activity MF
GO:0004540 ribonuclease activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006379 mRNA cleavage BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009735 response to cytokinin BP
GO:0009737 response to abscisic acid BP
GO:0009892 negative regulation of metabolic process BP
GO:0009954 proximal/distal pattern formation BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010267 ta-siRNA processing BP
GO:0010305 leaf vascular tissue pattern formation BP
GO:0010445 nuclear dicing body CC
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010589 leaf proximal/distal pattern formation BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0014070 response to organic cyclic compound BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016246 RNA-mediated post-transcriptional gene silencing BP
GO:0016441 post-transcriptional gene silencing BP
GO:0016458 obsolete gene silencing BP
GO:0016604 nuclear body CC
GO:0016787 hydrolase activity MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0016891 RNA endonuclease activity, producing 5'-phosphomonoesters MF
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters MF
GO:0019222 regulation of metabolic process BP
GO:0030422 siRNA processing BP
GO:0031047 RNA-mediated gene silencing BP
GO:0031050 ncRNA processing BP
GO:0031053 primary miRNA processing BP
GO:0031054 pre-miRNA processing BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032296 double-stranded RNA-specific ribonuclease activity MF
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0033993 response to lipid BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035194 RNA-mediated post-transcriptional gene silencing BP
GO:0035195 miRNA-mediated gene silencing BP
GO:0035196 miRNA processing BP
GO:0035198 miRNA binding MF
GO:0035279 miRNA-mediated gene silencing by mRNA destabilization BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042221 response to chemical BP
GO:0042802 identical protein binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043331 response to dsRNA BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061980 regulatory RNA binding MF
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070887 cellular response to chemical stimulus BP
GO:0070918 regulatory ncRNA processing BP
GO:0071310 cellular response to organic substance BP
GO:0071359 cellular response to dsRNA BP
GO:0071407 cellular response to organic cyclic compound BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0090305 nucleic acid phosphodiester bond hydrolysis BP
GO:0090501 RNA phosphodiester bond hydrolysis BP
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic BP
GO:0097159 organic cyclic compound binding MF
GO:0097305 response to alcohol BP
GO:0098795 global gene silencing by mRNA cleavage BP
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP
GO:1901700 response to oxygen-containing compound BP