Basic Information
Gene ID
Pop_G02G065251
Position
chrG02:22430882-22435192 (-)
4310bp
Gene Type
gene
Gene Description (Protein Product)
RNA-binding protein
Organism
Also AS Potri.002G004600AT1G76460Potri.002G004600.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G08G022122 Belongs to the Frigida family
Pop_G03G011277 Oligouridylate-binding protein 1B-like
Pop_G06G051486 Oligouridylate-binding protein 1-like
Regulatory gene
Pop_A01G005990 MADS-box transcription factor
Pop_A01G015459 Transcription factor TCP4-like
Pop_A01G032201 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000381 regulation of alternative mRNA splicing, via spliceosome BP
GO:0001501 skeletal system development BP
GO:0001756 somitogenesis BP
GO:0001947 heart looping BP
GO:0002009 morphogenesis of an epithelium BP
GO:0003002 regionalization BP
GO:0003007 heart morphogenesis BP
GO:0003143 embryonic heart tube morphogenesis BP
GO:0003228 atrial cardiac muscle tissue development BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003730 mRNA 3'-UTR binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006417 regulation of translation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0007275 multicellular organism development BP
GO:0007368 determination of left/right symmetry BP
GO:0007389 pattern specification process BP
GO:0007507 heart development BP
GO:0007517 muscle organ development BP
GO:0007519 skeletal muscle tissue development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009792 embryo development ending in birth or egg hatching BP
GO:0009799 specification of symmetry BP
GO:0009855 determination of bilateral symmetry BP
GO:0009887 animal organ morphogenesis BP
GO:0009888 tissue development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009952 anterior/posterior pattern specification BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010628 positive regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0010638 positive regulation of organelle organization BP
GO:0010720 positive regulation of cell development BP
GO:0010830 regulation of myotube differentiation BP
GO:0010831 positive regulation of myotube differentiation BP
GO:0014706 striated muscle tissue development BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016202 regulation of striated muscle tissue development BP
GO:0017091 mRNA 3'-UTR AU-rich region binding MF
GO:0017148 negative regulation of translation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0033043 regulation of organelle organization BP
GO:0033554 cellular response to stress BP
GO:0034248 regulation of amide metabolic process BP
GO:0034249 negative regulation of amide metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035050 embryonic heart tube development BP
GO:0035239 tube morphogenesis BP
GO:0035282 segmentation BP
GO:0035295 tube development BP
GO:0035925 mRNA 3'-UTR AU-rich region binding MF
GO:0036002 pre-mRNA binding MF
GO:0043009 chordate embryonic development BP
GO:0043170 macromolecule metabolic process BP
GO:0043484 regulation of RNA splicing BP
GO:0043487 regulation of RNA stability BP
GO:0043488 regulation of mRNA stability BP
GO:0043489 RNA stabilization BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045595 regulation of cell differentiation BP
GO:0045597 positive regulation of cell differentiation BP
GO:0045661 regulation of myoblast differentiation BP
GO:0045663 positive regulation of myoblast differentiation BP
GO:0045844 positive regulation of striated muscle tissue development BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048024 regulation of mRNA splicing, via spliceosome BP
GO:0048255 mRNA stabilization BP
GO:0048513 animal organ development BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048562 embryonic organ morphogenesis BP
GO:0048568 embryonic organ development BP
GO:0048598 embryonic morphogenesis BP
GO:0048634 regulation of muscle organ development BP
GO:0048636 positive regulation of muscle organ development BP
GO:0048641 regulation of skeletal muscle tissue development BP
GO:0048643 positive regulation of skeletal muscle tissue development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048701 embryonic cranial skeleton morphogenesis BP
GO:0048702 embryonic neurocranium morphogenesis BP
GO:0048704 embryonic skeletal system morphogenesis BP
GO:0048705 skeletal system morphogenesis BP
GO:0048706 embryonic skeletal system development BP
GO:0048729 tissue morphogenesis BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050684 regulation of mRNA processing BP
GO:0050779 RNA destabilization BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051094 positive regulation of developmental process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051147 regulation of muscle cell differentiation BP
GO:0051149 positive regulation of muscle cell differentiation BP
GO:0051153 regulation of striated muscle cell differentiation BP
GO:0051155 positive regulation of striated muscle cell differentiation BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060284 regulation of cell development BP
GO:0060297 regulation of sarcomere organization BP
GO:0060298 positive regulation of sarcomere organization BP
GO:0060429 epithelium development BP
GO:0060537 muscle tissue development BP
GO:0060538 skeletal muscle organ development BP
GO:0060562 epithelial tube morphogenesis BP
GO:0061013 regulation of mRNA catabolic process BP
GO:0061014 positive regulation of mRNA catabolic process BP
GO:0061053 somite development BP
GO:0061061 muscle structure development BP
GO:0061157 mRNA destabilization BP
GO:0061158 3'-UTR-mediated mRNA destabilization BP
GO:0061371 determination of heart left/right asymmetry BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071704 organic substance metabolic process BP
GO:0072358 circulatory system development BP
GO:0072359 circulatory system development BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097157 pre-mRNA intronic binding MF
GO:0097159 organic cyclic compound binding MF
GO:0110020 regulation of actomyosin structure organization BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901861 regulation of muscle tissue development BP
GO:1901863 positive regulation of muscle tissue development BP
GO:1902115 regulation of organelle assembly BP
GO:1902117 positive regulation of organelle assembly BP
GO:1902369 negative regulation of RNA catabolic process BP
GO:1902373 negative regulation of mRNA catabolic process BP
GO:1902809 regulation of skeletal muscle fiber differentiation BP
GO:1902811 positive regulation of skeletal muscle fiber differentiation BP
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902905 positive regulation of supramolecular fiber organization BP
GO:1903311 regulation of mRNA metabolic process BP
GO:1903312 negative regulation of mRNA metabolic process BP
GO:1903313 positive regulation of mRNA metabolic process BP
GO:1904888 cranial skeletal system development BP
GO:1905868 regulation of 3'-UTR-mediated mRNA stabilization BP
GO:1905870 positive regulation of 3'-UTR-mediated mRNA stabilization BP
GO:1990715 mRNA CDS binding MF
GO:1990825 sequence-specific mRNA binding MF
GO:2000026 regulation of multicellular organismal development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000736 regulation of stem cell differentiation BP
GO:2000738 positive regulation of stem cell differentiation BP
GO:2000765 regulation of cytoplasmic translation BP
GO:2000766 negative regulation of cytoplasmic translation BP
GO:2001014 regulation of skeletal muscle cell differentiation BP
GO:2001016 positive regulation of skeletal muscle cell differentiation BP