PPGR - Gene Detail

Basic Information

Gene ID	Pop_G04G010682 View in Genome Browser
Position	chrG04:396893-401127 (+) 4234bp
Gene Type	gene
Gene Description (Protein Product)	"Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall
Organism	Populus alba x Populus glandulosa
Also AS	Potri.004G234100AT4G19420Potri.004G234100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G15G074417 pre-mRNA-splicing factor SPF27 homolog

Pop_G11G070390 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation

Pop_G05G032902 cellular macromolecule catabolic process

Regulatory gene

Pop_A01G003802 AP2-like ethylene-responsive transcription factor

Pop_A01G004199 GAGA binding protein-like family

Pop_A01G029538 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005618	cell wall	CC
GO:0005623	obsolete cell	CC
GO:0008150	biological_process	BP
GO:0009505	plant-type cell wall	CC
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0030312	external encapsulating structure	CC
GO:0044464	obsolete cell part	CC
GO:0045229	external encapsulating structure organization	BP
GO:0052689	carboxylic ester hydrolase activity	MF
GO:0052793	pectin acetylesterase activity	MF
GO:0071554	cell wall organization or biogenesis	BP
GO:0071555	cell wall organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC