PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G04G023365 View in Genome Browser
Position	chrG04:18457595-18459252 (+) 1657bp
Gene Type	gene
Gene Description (Protein Product)	Anthocyanidin
Organism	Populus alba x Populus glandulosa
Also AS	Potri.004G030700AT1G61720Potri.004G030700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G06G053822 Belongs to the UDP-glycosyltransferase family Pop_G18G080143 Belongs to the UDP-glycosyltransferase family Pop_G19G009566 Anthocyanidin 3-O-glucosyltransferase 2-like
Regulatory gene	Pop_A01G003802 AP2-like ethylene-responsive transcription factor Pop_A01G005990 MADS-box transcription factor Pop_A01G025061 B3 DNA binding domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009962	regulation of flavonoid biosynthetic process	BP
GO:0009964	negative regulation of flavonoid biosynthetic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	MF
GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	MF
GO:0019222	regulation of metabolic process	BP
GO:0033729	anthocyanidin reductase activity	MF
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0065007	biological regulation	BP
GO:0080090	regulation of primary metabolic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00941	Flavonoid biosynthesis	Flavonoids are a major class of plant secondary metabolites that serves a multitude of functions including pigments and antioxidant activity. Flavonoids are synthesized from phenylpropanoid derivatives by condensation with malonyl-CoA. For example, condensation of p-coumaroyl-CoA (C6-C3) with three malonyl-CoA (C3) molecules results in naringenin chalcone with a diphenylpropane (C6-C3-C6) unit, which is converted to naringenin with the flavone (2-phenylchromen-4-one) backbone by conjugate ring closure. These and further modifications yield a variety of structural forms including chalcones, flavanones, dihyroflavonols, and flavans, anthocyanins, flavones and flavonols, and isoflavonoids.