PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G04G023471 View in Genome Browser
Position	chrG04:20533050-20535211 (-) 2161bp
Gene Type	gene
Gene Description (Protein Product)	UBA and UBX domain-containing protein
Organism	Populus alba x Populus glandulosa
Also AS	Potri.011G011300AT4G04210Potri.011G011300.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G08G046457 UBX domain-containing protein Pop_G18G086209 cell division cycle protein 48 Pop_G06G076068 cell division cycle protein 48
Regulatory gene	Pop_A01G004199 GAGA binding protein-like family Pop_A01G005990 MADS-box transcription factor Pop_A02G005181 Protein BASIC PENTACYSTEINE6-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000045	autophagosome assembly	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006914	autophagy	BP
GO:0006996	organelle organization	BP
GO:0006997	nucleus organization	BP
GO:0006998	nuclear envelope organization	BP
GO:0007030	Golgi organization	BP
GO:0007033	vacuole organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009987	cellular process	BP
GO:0010256	endomembrane system organization	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0010921	regulation of phosphatase activity	BP
GO:0016043	cellular component organization	BP
GO:0016236	macroautophagy	BP
GO:0019208	phosphatase regulator activity	MF
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019888	protein phosphatase regulator activity	MF
GO:0019899	enzyme binding	MF
GO:0019941	modification-dependent protein catabolic process	BP
GO:0022607	cellular component assembly	BP
GO:0030163	protein catabolic process	BP
GO:0030234	enzyme regulator activity	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031468	nuclear membrane reassembly	BP
GO:0032182	ubiquitin-like protein binding	MF
GO:0032268	regulation of protein metabolic process	BP
GO:0035303	regulation of dephosphorylation	BP
GO:0035304	regulation of protein dephosphorylation	BP
GO:0043130	ubiquitin binding	MF
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0043666	regulation of phosphoprotein phosphatase activity	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0051117	ATPase binding	MF
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061024	membrane organization	BP
GO:0061025	membrane fusion	BP
GO:0061919	process utilizing autophagic mechanism	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070925	organelle assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0098772	molecular function regulator activity	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1905037	autophagosome organization	BP

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.