Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G05G008598
View in Genome Browser
Position
chrG05:3057727-3066051 (+)
8324bp
Gene Type
gene
Gene Description (Protein Product)
methylcrotonoyl-CoA carboxylase subunit alpha
Organism
Populus alba x Populus glandulosa
Also AS Potri.005G213300AT1G03090Potri.005G213300.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G10G022933 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
Pop_G08G083354 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
Pop_G09G027765 Isovaleryl-CoA dehydrogenase
Regulatory gene
Pop_A01G002215 NAC domain-containing protein
Pop_A01G003796 isoform X1
Pop_A01G003801 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004485 methylcrotonoyl-CoA carboxylase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0005829 cytosol CC
GO:0005840 ribosome CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006551 leucine metabolic process BP
GO:0006552 leucine catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009063 amino acid catabolic process BP
GO:0009081 branched-chain amino acid metabolic process BP
GO:0009083 branched-chain amino acid catabolic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0016054 organic acid catabolic process BP
GO:0016421 CoA carboxylase activity MF
GO:0016874 ligase activity MF
GO:0016885 ligase activity, forming carbon-carbon bonds MF
GO:0019752 carboxylic acid metabolic process BP
GO:0022626 cytosolic ribosome CC
GO:0031974 membrane-enclosed lumen CC
GO:0032991 protein-containing complex CC
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044445 obsolete cytosolic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0046395 carboxylic acid catabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0050897 cobalt ion binding MF
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901606 alpha-amino acid catabolic process BP
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map01100 Metabolic pathways -
map00280 Valine, leucine and isoleucine degradation -