PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G05G017871 View in Genome Browser
Position	chrG05:11902593-11904245 (-) 1652bp
Gene Type	gene
Gene Description (Protein Product)	E3 ubiquitin-protein ligase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.005G127900AT2G23780Potri.005G127900.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G16G016127 RING-type zinc-finger Pop_G06G003743 RING-type zinc-finger Pop_G09G027875 Prokaryotic RING finger family 4
Regulatory gene	Pop_A01G002215 NAC domain-containing protein Pop_A01G004012 Myb/SANT-like DNA-binding domain Pop_A01G004084 NAC domain-containing protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004842	ubiquitin-protein transferase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005789	endoplasmic reticulum membrane	CC
GO:0006464	protein modification process	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006928	obsolete movement of cell or subcellular component	BP
GO:0006950	response to stress	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010243	response to organonitrogen compound	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016477	cell migration	BP
GO:0016567	protein ubiquitination	BP
GO:0016740	transferase activity	MF
GO:0018996	molting cycle, collagen and cuticulin-based cuticle	BP
GO:0019538	protein metabolic process	BP
GO:0019787	ubiquitin-like protein transferase activity	MF
GO:0019899	enzyme binding	MF
GO:0019941	modification-dependent protein catabolic process	BP
GO:0030054	cell junction	CC
GO:0030154	cell differentiation	BP
GO:0030163	protein catabolic process	BP
GO:0031984	organelle subcompartment	CC
GO:0032446	protein modification by small protein conjugation	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032991	protein-containing complex	CC
GO:0033554	cellular response to stress	BP
GO:0034976	response to endoplasmic reticulum stress	BP
GO:0035966	response to topologically incorrect protein	BP
GO:0035967	cellular response to topologically incorrect protein	BP
GO:0036211	protein modification process	BP
GO:0036503	ERAD pathway	BP
GO:0036513	Derlin-1 retrotranslocation complex	CC
GO:0040011	locomotion	BP
GO:0040039	inductive cell migration	BP
GO:0042175	nuclear outer membrane-endoplasmic reticulum membrane network	CC
GO:0042221	response to chemical	BP
GO:0042303	molting cycle	BP
GO:0042692	muscle cell differentiation	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043292	contractile fiber	CC
GO:0043412	macromolecule modification	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044390	ubiquitin-like protein conjugating enzyme binding	MF
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044449	obsolete contractile fiber part	CC
GO:0044464	obsolete cell part	CC
GO:0048468	cell development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0048870	cell motility	BP
GO:0050896	response to stimulus	BP
GO:0051146	striated muscle cell differentiation	BP
GO:0051179	localization	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051674	localization of cell	BP
GO:0051716	cellular response to stimulus	BP
GO:0051788	response to misfolded protein	BP
GO:0055001	muscle cell development	BP
GO:0055002	striated muscle cell development	BP
GO:0055120	striated muscle dense body	CC
GO:0061061	muscle structure development	BP
GO:0061630	ubiquitin protein ligase activity	MF
GO:0061659	ubiquitin-like protein ligase activity	MF
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071218	cellular response to misfolded protein	BP
GO:0071310	cellular response to organic substance	BP
GO:0071704	organic substance metabolic process	BP
GO:0071712	ER-associated misfolded protein catabolic process	BP
GO:0098796	membrane protein complex	CC
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:0099080	supramolecular complex	CC
GO:0099081	supramolecular polymer	CC
GO:0099512	supramolecular fiber	CC
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901698	response to nitrogen compound	BP

KEGG Term	Name	Description
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.