Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G05G057416
View in Genome Browser
Position
chrG05:663439-665424 (+)
1985bp
Gene Type
gene
Gene Description (Protein Product)
Lysine-specific histone demethylase 1 homolog
Organism
Populus alba x Populus glandulosa
Also AS Potri.002G013100AT1G62830Potri.002G013100.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G09G022415 mRNA-decapping enzyme-like
Pop_G09G022417 OTU domain-containing protein
Pop_G15G048847 Belongs to the peptidase A1 family
Regulatory gene
Pop_A01G004199 GAGA binding protein-like family
Pop_A01G004498 Tesmin/TSO1-like CXC domain
Pop_A01G025061 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006325 chromatin organization BP
GO:0006464 protein modification process BP
GO:0006476 protein deacetylation BP
GO:0006479 protein methylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008213 protein alkylation BP
GO:0009987 cellular process BP
GO:0016043 cellular component organization BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016571 histone methylation BP
GO:0016575 histone deacetylation BP
GO:0018022 peptidyl-lysine methylation BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019538 protein metabolic process BP
GO:0022622 root system development BP
GO:0032259 methylation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0034968 histone lysine methylation BP
GO:0035601 protein deacylation BP
GO:0036211 protein modification process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048364 root development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0051276 chromosome organization BP
GO:0051568 histone H3-K4 methylation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0098732 macromolecule deacylation BP
GO:0099402 plant organ development BP
GO:1901564 organonitrogen compound metabolic process BP