PPGR - Gene Detail

Basic Information

Gene ID	Pop_G06G002975 View in Genome Browser
Position	chrG06:835308-837812 (+) 2504bp
Gene Type	gene
Gene Description (Protein Product)	Ubiquitinyl hydrolase 1
Organism	Populus alba x Populus glandulosa
Also AS	Potri.006G266100AT5G10790Potri.006G266100.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G18G078309 TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription

Pop_G09G031944 SAGA-associated factor 11

Pop_G17G033186 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

Regulatory gene

Pop_A01G003802 AP2-like ethylene-responsive transcription factor

Pop_A01G005990 MADS-box transcription factor

Pop_A01G029538 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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