PPGR - Gene Detail

Basic Information

Gene ID	Pop_G06G003509 View in Genome Browser
Position	chrG06:4032366-4037329 (+) 4963bp
Gene Type	gene
Gene Description (Protein Product)	Phytanoyl-CoA dioxygenase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.006G222800AT2G01490Potri.006G222800.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G11G070390 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation

Pop_G09G027765 Isovaleryl-CoA dehydrogenase

Pop_G13G071118 Required for peroxisome biogenesis and for PTS1- and PTS2-dependent protein import into peroxisomes

Regulatory gene

Pop_A01G003924 Zinc finger protein

Pop_A01G004012 Myb/SANT-like DNA-binding domain

Pop_A01G004096 transcriptional regulator

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0016020	membrane	CC
GO:0016491	oxidoreductase activity	MF
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	MF
GO:0016706	2-oxoglutarate-dependent dioxygenase activity	MF
GO:0044464	obsolete cell part	CC
GO:0048244	phytanoyl-CoA dioxygenase activity	MF
GO:0051213	dioxygenase activity	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map04146	Peroxisome	Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.