PPGR - Gene Detail

Basic Information

Gene ID	Pop_G06G035487 View in Genome Browser
Position	chrG06:374005-379969 (+) 5964bp
Gene Type	gene
Gene Description (Protein Product)	-
Organism	Populus alba x Populus glandulosa
Also AS	Potri.006G275200AT4G31430Potri.006G275200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G07G085321 Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity

Pop_G17G086902 Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity

Pop_G17G086900 Protein FAR1-RELATED SEQUENCE

Regulatory gene

Pop_A01G003802 AP2-like ethylene-responsive transcription factor

Pop_A01G004498 Tesmin/TSO1-like CXC domain

Pop_A01G029538 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005737	cytoplasm	CC
GO:0005768	endosome	CC
GO:0005794	Golgi apparatus	CC
GO:0005802	trans-Golgi network	CC
GO:0005886	plasma membrane	CC
GO:0006996	organelle organization	BP
GO:0006997	nucleus organization	BP
GO:0006998	nuclear envelope organization	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0010256	endomembrane system organization	BP
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0031410	cytoplasmic vesicle	CC
GO:0031967	organelle envelope	CC
GO:0031975	envelope	CC
GO:0031982	vesicle	CC
GO:0031984	organelle subcompartment	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044431	obsolete Golgi apparatus part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0061024	membrane organization	BP
GO:0071763	nuclear membrane organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0097708	intracellular vesicle	CC
GO:0098791	Golgi apparatus subcompartment	CC