Basic Information
Gene ID
Pop_G06G089712
Position
chrG06:21855709-21862279 (+)
6570bp
Gene Type
gene
Gene Description (Protein Product)
"hydroxymethylglutaryl-CoA lyase
Organism
Also AS Potri.006G036800AT2G26800Potri.006G036800.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G11G070386 Peroxisome biogenesis protein
Pop_G14G088862 Belongs to the thiolase family
Pop_G14G089034 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
Regulatory gene
Pop_A01G004012 Myb/SANT-like DNA-binding domain
Pop_A01G004206 Myb family transcription factor
Pop_A01G004240 Trihelix transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
map01100 Metabolic pathways -
map00650 Butanoate metabolism -
map00280 Valine, leucine and isoleucine degradation -