Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G08G021771
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Position
chrG08:18450836-18455539 (-)
4703bp
Gene Type
gene
Gene Description (Protein Product)
Pectate lyase
Organism
Populus alba x Populus glandulosa
Also AS Potri.008G032700AT5G04310Potri.008G032700.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G11G070396 Acts in the modification of cell walls via demethylesterification of cell wall pectin
Pop_G10G000159 Acts in the modification of cell walls via demethylesterification of cell wall pectin
Pop_G12G008066 Glycosyl hydrolases family 28
Regulatory gene
Pop_A01G004498 Tesmin/TSO1-like CXC domain
Pop_A01G025061 B3 DNA binding domain
Pop_A01G032239 B3 domain-containing transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0002376 immune system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009814 defense response to other organism BP
GO:0009825 multidimensional cell growth BP
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides MF
GO:0030570 pectate lyase activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031225 obsolete anchored component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0040007 growth BP
GO:0042545 cell wall modification BP
GO:0042547 cell wall modification involved in multidimensional cell growth BP
GO:0043207 response to external biotic stimulus BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0045229 external encapsulating structure organization BP
GO:0046658 obsolete anchored component of plasma membrane CC
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0098542 defense response to other organism BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -