PPGR - Gene Detail

Basic Information

Gene ID	Pop_G08G087149 View in Genome Browser
Position	chrG08:5452698-5458285 (+) 5587bp
Gene Type	gene
Gene Description (Protein Product)	"Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP
Organism	Populus alba x Populus glandulosa
Also AS	Potri.008G203600AT5G19150Potri.008G203600.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G09G011650 Phototropin-2-like

Pop_G17G086902 Component of the EKC KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity

Pop_G17G086900 Protein FAR1-RELATED SEQUENCE

Regulatory gene

Pop_A01G003796 isoform X1

Pop_A01G003952 transcription factor

Pop_A01G004056 dnaJ homolog subfamily C member

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006734	NADH metabolic process	BP
GO:0006739	NADP metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0016829	lyase activity	MF
GO:0016835	carbon-oxygen lyase activity	MF
GO:0016836	hydro-lyase activity	MF
GO:0016853	isomerase activity	MF
GO:0016854	racemase and epimerase activity	MF
GO:0019362	pyridine nucleotide metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019674	NAD metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046496	nicotinamide nucleotide metabolic process	BP
GO:0047453	ATP-dependent NAD(P)H-hydrate dehydratase activity	MF
GO:0051186	obsolete cofactor metabolic process	BP
GO:0052856	NADHX epimerase activity	MF
GO:0052857	NADPHX epimerase activity	MF
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP