Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G09G014123
View in Genome Browser
Position
chrG09:8954631-8959350 (+)
4719bp
Gene Type
gene
Gene Description (Protein Product)
RING-type E3 ubiquitin transferase
Organism
Populus alba x Populus glandulosa
Also AS Potri.009G029600AT3G46510Potri.009G029600.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G13G034716 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Pop_G19G009544 Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Pop_G16G016227 Ras-related protein
Regulatory gene
Pop_A01G005990 MADS-box transcription factor
Pop_A01G025061 B3 DNA binding domain
Pop_A01G032239 B3 domain-containing transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0002682 regulation of immune system process BP
GO:0002683 negative regulation of immune system process BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003735 structural constituent of ribosome MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005102 signaling receptor binding MF
GO:0005198 structural molecule activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005840 ribosome CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009987 cellular process BP
GO:0010941 regulation of cell death BP
GO:0015934 large ribosomal subunit CC
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019843 rRNA binding MF
GO:0022625 cytosolic large ribosomal subunit CC
GO:0022626 cytosolic ribosome CC
GO:0031347 regulation of defense response BP
GO:0031348 negative regulation of defense response BP
GO:0032446 protein modification by small protein conjugation BP
GO:0032991 protein-containing complex CC
GO:0033612 receptor serine/threonine kinase binding MF
GO:0036211 protein modification process BP
GO:0042742 defense response to bacterium BP
GO:0042981 regulation of apoptotic process BP
GO:0043066 negative regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043069 negative regulation of programmed cell death BP
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044391 ribosomal subunit CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044445 obsolete cytosolic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048586 regulation of long-day photoperiodism, flowering BP
GO:0050776 regulation of immune response BP
GO:0050777 negative regulation of immune response BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0060548 negative regulation of cell death BP
GO:0065007 biological regulation BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0070696 transmembrane receptor protein serine/threonine kinase binding MF
GO:0071704 organic substance metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0097159 organic cyclic compound binding MF
GO:0098542 defense response to other organism BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1990904 ribonucleoprotein complex CC
GO:2000026 regulation of multicellular organismal development BP
GO:2000028 regulation of photoperiodism, flowering BP
GO:2000241 regulation of reproductive process BP