Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G09G014157
View in Genome Browser
Position
chrG09:9268983-9277824 (-)
8841bp
Gene Type
gene
Gene Description (Protein Product)
RING/Ubox like zinc-binding domain
Organism
Populus alba x Populus glandulosa
Also AS Potri.009G026200AT3G45630Potri.009G026200.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G17G027410 transcription complex subunit
Pop_G13G071345 General negative regulator of transcription subunit
Pop_G19G009260 General negative regulator of transcription subunit
Regulatory gene
Pop_A01G005990 MADS-box transcription factor
Pop_A01G056931 Dof zinc finger protein
Pop_A01G059879 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000075 cell cycle checkpoint signaling BP
GO:0000077 DNA damage checkpoint signaling BP
GO:0000278 mitotic cell cycle BP
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay BP
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening BP
GO:0000956 nuclear-transcribed mRNA catabolic process BP
GO:0002682 regulation of immune system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006464 protein modification process BP
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006977 DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest BP
GO:0007049 cell cycle BP
GO:0007093 mitotic cell cycle checkpoint signaling BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010564 regulation of cell cycle process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0010948 negative regulation of cell cycle process BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0022402 cell cycle process BP
GO:0023052 signaling BP
GO:0030163 protein catabolic process BP
GO:0030330 DNA damage response, signal transduction by p53 class mediator BP
GO:0031570 DNA integrity checkpoint signaling BP
GO:0031571 mitotic G1 DNA damage checkpoint signaling BP
GO:0032446 protein modification by small protein conjugation BP
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0035556 intracellular signal transduction BP
GO:0036211 protein modification process BP
GO:0042770 signal transduction in response to DNA damage BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044773 mitotic DNA damage checkpoint signaling BP
GO:0044774 mitotic DNA integrity checkpoint signaling BP
GO:0044783 mitotic G1 DNA damage checkpoint signaling BP
GO:0044819 mitotic G1/S transition checkpoint signaling BP
GO:0045595 regulation of cell differentiation BP
GO:0045637 regulation of myeloid cell differentiation BP
GO:0045652 regulation of megakaryocyte differentiation BP
GO:0045786 negative regulation of cell cycle BP
GO:0045787 positive regulation of cell cycle BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0051865 protein autoubiquitination BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071156 regulation of cell cycle BP
GO:0071158 regulation of cell cycle BP
GO:0071704 organic substance metabolic process BP
GO:0072331 signal transduction by p53 class mediator BP
GO:0072395 cell cycle checkpoint signaling BP
GO:0072401 DNA integrity checkpoint signaling BP
GO:0072413 mitotic cell cycle checkpoint signaling BP
GO:0072422 DNA damage checkpoint signaling BP
GO:0072431 mitotic G1 DNA damage checkpoint signaling BP
GO:0090068 positive regulation of cell cycle process BP
GO:0090304 nucleic acid metabolic process BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901987 regulation of cell cycle phase transition BP
GO:1901988 negative regulation of cell cycle phase transition BP
GO:1901990 regulation of mitotic cell cycle phase transition BP
GO:1901991 negative regulation of mitotic cell cycle phase transition BP
GO:1902400 mitotic G1 DNA damage checkpoint signaling BP
GO:1902402 mitotic DNA damage checkpoint signaling BP
GO:1902403 mitotic DNA integrity checkpoint signaling BP
GO:1902806 regulation of cell cycle G1/S phase transition BP
GO:1902807 negative regulation of cell cycle G1/S phase transition BP
GO:1903047 mitotic cell cycle process BP
GO:1903706 regulation of hemopoiesis BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000045 regulation of G1/S transition of mitotic cell cycle BP
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle BP
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.