Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G09G014173
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Position
chrG09:7606440-7610576 (+)
4136bp
Gene Type
gene
Gene Description (Protein Product)
Phytochromobilin ferredoxin oxidoreductase
Organism
Populus alba x Populus glandulosa
Also AS Potri.009G048000AT3G09150Potri.009G048000.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G11G070361 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Pop_G18G019161 Heme oxygenase 1
Pop_G09G027944 Xylosyltransferase
Regulatory gene
Pop_A01G004206 Myb family transcription factor
Pop_A01G004498 Tesmin/TSO1-like CXC domain
Pop_A01G005990 MADS-box transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0010019 chloroplast-nucleus signaling pathway BP
GO:0016491 oxidoreductase activity MF
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor MF
GO:0023052 signaling BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0050619 phytochromobilin:ferredoxin oxidoreductase activity MF
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0065007 biological regulation BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map00860 Porphyrin and chlorophyll metabolism -