Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G09G027794
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Position
chrG09:10245669-10249513 (+)
3844bp
Gene Type
gene
Gene Description (Protein Product)
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism
Populus alba x Populus glandulosa
Also AS Potri.009G014800AT2G28350Potri.009G014800.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G10G048314 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Pop_UnG002470 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Pop_G18G080102 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Regulatory gene
Pop_A01G004012 Myb/SANT-like DNA-binding domain
Pop_A01G004199 GAGA binding protein-like family
Pop_A01G004240 Trihelix transcription factor
Target gene
Pop_A01G000040 Reverse transcriptase (RNA-dependent DNA polymerase)
Pop_A01G000045 -
Pop_A01G003903 Cholinephosphate cytidylyltransferase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0001101 response to acid chemical BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0003723 RNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006355 regulation of DNA-templated transcription BP
GO:0007154 cell communication BP
GO:0007165 signal transduction BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0009734 auxin-activated signaling pathway BP
GO:0009737 response to abscisic acid BP
GO:0009738 abscisic acid-activated signaling pathway BP
GO:0009743 response to carbohydrate BP
GO:0009755 hormone-mediated signaling pathway BP
GO:0009791 post-embryonic development BP
GO:0009889 regulation of biosynthetic process BP
GO:0009908 flower development BP
GO:0009962 regulation of flavonoid biosynthetic process BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010154 fruit development BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0022414 reproductive process BP
GO:0022622 root system development BP
GO:0023052 signaling BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031537 regulation of anthocyanin metabolic process BP
GO:0031540 regulation of anthocyanin biosynthetic process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032870 cellular response to hormone stimulus BP
GO:0033993 response to lipid BP
GO:0035198 miRNA binding MF
GO:0040007 growth BP
GO:0042221 response to chemical BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048364 root development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048437 floral organ development BP
GO:0048438 floral whorl development BP
GO:0048441 petal development BP
GO:0048442 sepal development BP
GO:0048464 flower calyx development BP
GO:0048465 corolla development BP
GO:0048589 developmental growth BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048829 root cap development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051301 cell division BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061458 reproductive system development BP
GO:0061980 regulatory RNA binding MF
GO:0065007 biological regulation BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071215 cellular response to abscisic acid stimulus BP
GO:0071229 cellular response to acid chemical BP
GO:0071310 cellular response to organic substance BP
GO:0071365 cellular response to auxin stimulus BP
GO:0071396 cellular response to lipid BP
GO:0071495 cellular response to endogenous stimulus BP
GO:0080090 regulation of primary metabolic process BP
GO:0090567 reproductive shoot system development BP
GO:0097159 organic cyclic compound binding MF
GO:0097305 response to alcohol BP
GO:0097306 cellular response to alcohol BP
GO:0099402 plant organ development BP
GO:0140110 transcription regulator activity MF
GO:1901363 heterocyclic compound binding MF
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP